Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4606 and GFF4607 overlap by 4 nucleotides GFF4607 and GFF4608 are separated by 62 nucleotides
GFF4606 - 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16), at 247,365 to 248,561
GFF4606
GFF4607 - Putative DNA methylase, at 248,558 to 248,974
GFF4607
GFF4608 - 3-hydroxyacyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.1.1.35) / Enoyl-CoA hydratase [fadN-fadA-fadE operon] (EC 4.2.1.17), at 249,037 to 251,436
GFF4608
Position (kb) 248
249 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 247.640 kb on - strand, within GFF4606 at 248.479 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.705 kb on + strand, within GFF4607 at 248.751 kb on + strand, within GFF4607 at 248.752 kb on - strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.974 kb on + strand at 248.975 kb on - strand at 249.143 kb on + strand at 249.143 kb on + strand at 249.143 kb on + strand at 249.144 kb on - strand at 249.371 kb on + strand, within GFF4608 at 249.371 kb on + strand, within GFF4608 at 249.371 kb on + strand, within GFF4608 at 249.371 kb on + strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.419 kb on + strand, within GFF4608 at 249.420 kb on - strand, within GFF4608 at 249.420 kb on - strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.555 kb on - strand, within GFF4608 at 249.555 kb on - strand, within GFF4608 at 249.555 kb on - strand, within GFF4608 at 249.611 kb on + strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.644 kb on + strand, within GFF4608 at 249.644 kb on + strand, within GFF4608 at 249.860 kb on + strand, within GFF4608 at 249.860 kb on + strand, within GFF4608 at 249.861 kb on - strand, within GFF4608 at 249.861 kb on - strand, within GFF4608 at 249.861 kb on - strand, within GFF4608 at 249.861 kb on - strand, within GFF4608
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 247,640 - GFF4606 0.23 -3.2 248,479 + -1.1 248,539 + -0.4 248,539 + +0.1 248,539 + -1.3 248,539 + +0.2 248,539 + -1.1 248,539 + -0.4 248,540 - -1.4 248,540 - -0.5 248,540 - -0.6 248,540 - -1.5 248,540 - -2.3 248,540 - -0.9 248,705 + GFF4607 0.35 -2.1 248,751 + GFF4607 0.46 -0.4 248,752 - GFF4607 0.47 -1.0 248,829 + GFF4607 0.65 -2.3 248,829 + GFF4607 0.65 -0.8 248,829 + GFF4607 0.65 +0.0 248,829 + GFF4607 0.65 -2.4 248,830 - GFF4607 0.65 -1.8 248,830 - GFF4607 0.65 +0.6 248,830 - GFF4607 0.65 -3.4 248,830 - GFF4607 0.65 +1.2 248,830 - GFF4607 0.65 -0.1 248,830 - GFF4607 0.65 +0.2 248,830 - GFF4607 0.65 -1.8 248,974 + +1.0 248,975 - -0.7 249,143 + -0.7 249,143 + -2.6 249,143 + -0.5 249,144 - -2.2 249,371 + GFF4608 0.14 -2.0 249,371 + GFF4608 0.14 -3.8 249,371 + GFF4608 0.14 -1.4 249,371 + GFF4608 0.14 +0.3 249,372 - GFF4608 0.14 -4.8 249,372 - GFF4608 0.14 +0.5 249,372 - GFF4608 0.14 +0.6 249,372 - GFF4608 0.14 -0.5 249,419 + GFF4608 0.16 -1.6 249,420 - GFF4608 0.16 +0.1 249,420 - GFF4608 0.16 -1.5 249,554 + GFF4608 0.22 -2.4 249,554 + GFF4608 0.22 +0.4 249,554 + GFF4608 0.22 +2.2 249,554 + GFF4608 0.22 -1.0 249,554 + GFF4608 0.22 -1.4 249,555 - GFF4608 0.22 -1.6 249,555 - GFF4608 0.22 -2.0 249,555 - GFF4608 0.22 -1.6 249,611 + GFF4608 0.24 +0.2 249,612 - GFF4608 0.24 -0.7 249,612 - GFF4608 0.24 -1.1 249,612 - GFF4608 0.24 -1.5 249,612 - GFF4608 0.24 +0.2 249,644 + GFF4608 0.25 +0.3 249,644 + GFF4608 0.25 -0.4 249,860 + GFF4608 0.34 +1.8 249,860 + GFF4608 0.34 -0.6 249,861 - GFF4608 0.34 -2.4 249,861 - GFF4608 0.34 -0.2 249,861 - GFF4608 0.34 -0.2 249,861 - GFF4608 0.34 +1.3
Or see this region's nucleotide sequence