Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4551 and GFF4552 are separated by 8 nucleotides GFF4552 and GFF4553 are separated by 51 nucleotides GFF4553 and GFF4554 are separated by 62 nucleotides
GFF4551 - Putative preQ0 transporter YhhQ, at 188,784 to 189,353
GFF4551
GFF4552 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 189,362 to 189,991
GFF4552
GFF4553 - RNA chaperone ProQ, at 190,043 to 191,032
GFF4553
GFF4554 - Protease HtpX, at 191,095 to 191,970
GFF4554
Position (kb) 190
191
192 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.509 kb on + strand, within GFF4552 at 189.533 kb on + strand, within GFF4552 at 189.533 kb on + strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.890 kb on + strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.891 kb on - strand, within GFF4552 at 189.941 kb on + strand at 189.941 kb on + strand at 189.941 kb on + strand at 189.941 kb on + strand at 189.941 kb on + strand at 189.942 kb on - strand at 189.942 kb on - strand at 189.942 kb on - strand at 189.942 kb on - strand at 190.358 kb on + strand, within GFF4553 at 190.358 kb on + strand, within GFF4553 at 190.358 kb on + strand, within GFF4553 at 190.359 kb on - strand, within GFF4553 at 190.406 kb on + strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.407 kb on - strand, within GFF4553 at 190.493 kb on + strand, within GFF4553 at 190.494 kb on - strand, within GFF4553 at 190.494 kb on - strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.700 kb on + strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.701 kb on - strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.850 kb on + strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 190.851 kb on - strand, within GFF4553 at 191.073 kb on + strand at 191.073 kb on + strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.381 kb on + strand, within GFF4554 at 191.382 kb on - strand, within GFF4554 at 191.382 kb on - strand, within GFF4554 at 191.441 kb on + strand, within GFF4554 at 191.442 kb on - strand, within GFF4554 at 191.442 kb on - strand, within GFF4554 at 191.961 kb on + strand at 191.961 kb on + strand at 191.961 kb on + strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 192.005 kb on + strand at 192.005 kb on + strand at 192.005 kb on + strand at 192.006 kb on - strand at 192.006 kb on - strand at 192.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 189,392 + -1.1 189,392 + -1.1 189,392 + +0.9 189,392 + -0.1 189,392 + -0.1 189,392 + +1.6 189,392 + -0.8 189,393 - -2.0 189,393 - -1.3 189,393 - +1.5 189,393 - -0.4 189,393 - -0.5 189,393 - -0.1 189,509 + GFF4552 0.23 -0.0 189,533 + GFF4552 0.27 +1.9 189,533 + GFF4552 0.27 +2.2 189,534 - GFF4552 0.27 -1.7 189,534 - GFF4552 0.27 -1.0 189,534 - GFF4552 0.27 +0.5 189,534 - GFF4552 0.27 -0.9 189,534 - GFF4552 0.27 +1.6 189,534 - GFF4552 0.27 -0.5 189,534 - GFF4552 0.27 +0.7 189,534 - GFF4552 0.27 -1.1 189,534 - GFF4552 0.27 +0.7 189,890 + GFF4552 0.84 -0.4 189,890 + GFF4552 0.84 +0.3 189,890 + GFF4552 0.84 +0.6 189,890 + GFF4552 0.84 -0.4 189,890 + GFF4552 0.84 -1.0 189,890 + GFF4552 0.84 -0.2 189,890 + GFF4552 0.84 -0.1 189,890 + GFF4552 0.84 +1.1 189,890 + GFF4552 0.84 -3.4 189,890 + GFF4552 0.84 -2.3 189,890 + GFF4552 0.84 -1.1 189,891 - GFF4552 0.84 -2.6 189,891 - GFF4552 0.84 -0.7 189,891 - GFF4552 0.84 -3.2 189,891 - GFF4552 0.84 -0.6 189,891 - GFF4552 0.84 -1.5 189,941 + +0.5 189,941 + +0.5 189,941 + +0.4 189,941 + -1.4 189,941 + -0.4 189,942 - -2.1 189,942 - +1.1 189,942 - +0.0 189,942 - -3.1 190,358 + GFF4553 0.32 -1.4 190,358 + GFF4553 0.32 +1.9 190,358 + GFF4553 0.32 +0.1 190,359 - GFF4553 0.32 -3.8 190,406 + GFF4553 0.37 -0.0 190,407 - GFF4553 0.37 +1.0 190,407 - GFF4553 0.37 -0.6 190,407 - GFF4553 0.37 +0.5 190,407 - GFF4553 0.37 -3.6 190,493 + GFF4553 0.45 -0.4 190,494 - GFF4553 0.46 -0.4 190,494 - GFF4553 0.46 -1.6 190,700 + GFF4553 0.66 +0.2 190,700 + GFF4553 0.66 -0.7 190,700 + GFF4553 0.66 -0.9 190,700 + GFF4553 0.66 -0.9 190,700 + GFF4553 0.66 +2.4 190,700 + GFF4553 0.66 -1.4 190,700 + GFF4553 0.66 +2.2 190,700 + GFF4553 0.66 -1.6 190,700 + GFF4553 0.66 -0.3 190,701 - GFF4553 0.66 +2.1 190,701 - GFF4553 0.66 -0.6 190,701 - GFF4553 0.66 -2.4 190,701 - GFF4553 0.66 +1.3 190,701 - GFF4553 0.66 -1.1 190,701 - GFF4553 0.66 -0.8 190,701 - GFF4553 0.66 -0.7 190,701 - GFF4553 0.66 +1.5 190,701 - GFF4553 0.66 -0.9 190,850 + GFF4553 0.82 +0.8 190,850 + GFF4553 0.82 +0.6 190,850 + GFF4553 0.82 -0.6 190,850 + GFF4553 0.82 -1.3 190,850 + GFF4553 0.82 -2.7 190,850 + GFF4553 0.82 -0.8 190,850 + GFF4553 0.82 -1.8 190,850 + GFF4553 0.82 -0.4 190,850 + GFF4553 0.82 -0.7 190,850 + GFF4553 0.82 +0.4 190,850 + GFF4553 0.82 -1.0 190,850 + GFF4553 0.82 -3.3 190,850 + GFF4553 0.82 -1.2 190,850 + GFF4553 0.82 +0.2 190,850 + GFF4553 0.82 -2.1 190,850 + GFF4553 0.82 -0.4 190,850 + GFF4553 0.82 -0.8 190,850 + GFF4553 0.82 -1.0 190,850 + GFF4553 0.82 -0.4 190,850 + GFF4553 0.82 -0.4 190,850 + GFF4553 0.82 -3.0 190,850 + GFF4553 0.82 -2.5 190,850 + GFF4553 0.82 +0.6 190,850 + GFF4553 0.82 -0.6 190,850 + GFF4553 0.82 +0.4 190,850 + GFF4553 0.82 +0.8 190,851 - GFF4553 0.82 -3.0 190,851 - GFF4553 0.82 +0.5 190,851 - GFF4553 0.82 +0.3 190,851 - GFF4553 0.82 -0.6 190,851 - GFF4553 0.82 -1.1 190,851 - GFF4553 0.82 -1.3 190,851 - GFF4553 0.82 -0.9 190,851 - GFF4553 0.82 -1.2 190,851 - GFF4553 0.82 +1.9 190,851 - GFF4553 0.82 -0.2 190,851 - GFF4553 0.82 -0.3 190,851 - GFF4553 0.82 -0.5 190,851 - GFF4553 0.82 -1.6 190,851 - GFF4553 0.82 -0.4 190,851 - GFF4553 0.82 +0.9 190,851 - GFF4553 0.82 -2.8 190,851 - GFF4553 0.82 -0.8 190,851 - GFF4553 0.82 -0.1 190,851 - GFF4553 0.82 +0.2 190,851 - GFF4553 0.82 -2.6 190,851 - GFF4553 0.82 -0.1 190,851 - GFF4553 0.82 -3.2 190,851 - GFF4553 0.82 -0.5 190,851 - GFF4553 0.82 -0.1 190,851 - GFF4553 0.82 +0.2 190,851 - GFF4553 0.82 -1.8 190,851 - GFF4553 0.82 -1.0 190,851 - GFF4553 0.82 -2.0 190,851 - GFF4553 0.82 -0.9 190,851 - GFF4553 0.82 +2.3 190,851 - GFF4553 0.82 +0.4 190,851 - GFF4553 0.82 -1.5 190,851 - GFF4553 0.82 -1.3 190,851 - GFF4553 0.82 +1.5 191,073 + +1.4 191,073 + -0.6 191,074 - -1.1 191,074 - -0.6 191,074 - -2.2 191,074 - +1.2 191,086 + -2.1 191,086 + +0.3 191,378 + GFF4554 0.32 -0.3 191,378 + GFF4554 0.32 -1.0 191,378 + GFF4554 0.32 +2.3 191,378 + GFF4554 0.32 -1.5 191,378 + GFF4554 0.32 -0.8 191,378 + GFF4554 0.32 +0.6 191,378 + GFF4554 0.32 -3.4 191,378 + GFF4554 0.32 +0.2 191,378 + GFF4554 0.32 -2.2 191,378 + GFF4554 0.32 +1.0 191,378 + GFF4554 0.32 -2.0 191,378 + GFF4554 0.32 -0.3 191,378 + GFF4554 0.32 -1.1 191,379 - GFF4554 0.32 +1.0 191,379 - GFF4554 0.32 -0.6 191,379 - GFF4554 0.32 -1.9 191,379 - GFF4554 0.32 -0.6 191,379 - GFF4554 0.32 -1.6 191,379 - GFF4554 0.32 -2.0 191,379 - GFF4554 0.32 -2.2 191,379 - GFF4554 0.32 +0.8 191,379 - GFF4554 0.32 +0.5 191,379 - GFF4554 0.32 +1.3 191,381 + GFF4554 0.33 +0.4 191,382 - GFF4554 0.33 -3.4 191,382 - GFF4554 0.33 -2.0 191,441 + GFF4554 0.39 +0.2 191,442 - GFF4554 0.40 -0.6 191,442 - GFF4554 0.40 -0.1 191,961 + +0.3 191,961 + -2.7 191,961 + -0.0 191,962 - -1.9 191,962 - -2.9 191,962 - -1.1 191,962 - +1.1 191,962 - +2.1 192,005 + +0.7 192,005 + +1.8 192,005 + -0.7 192,006 - +1.9 192,006 - -1.2 192,006 - -0.1
Or see this region's nucleotide sequence