Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4530 and GFF4531 overlap by 4 nucleotides GFF4531 and GFF4532 are separated by 140 nucleotides GFF4532 and GFF4533 overlap by 11 nucleotides
GFF4530 - MBL-fold metallo-hydrolase superfamily, at 168,149 to 169,825
GFF4530
GFF4531 - Pseudouridine synthase, at 169,822 to 170,547
GFF4531
GFF4532 - hypothetical protein, at 170,688 to 171,233
GFF4532
GFF4533 - Multidrug resistance transporter, Bcr/CflA family, at 171,223 to 172,452
GFF4533
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 168.902 kb on + strand, within GFF4530 at 168.902 kb on + strand, within GFF4530 at 168.903 kb on - strand, within GFF4530 at 168.903 kb on - strand, within GFF4530 at 168.903 kb on - strand, within GFF4530 at 168.903 kb on - strand, within GFF4530 at 168.903 kb on - strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.904 kb on + strand, within GFF4530 at 168.905 kb on - strand, within GFF4530 at 168.905 kb on - strand, within GFF4530 at 168.905 kb on - strand, within GFF4530 at 168.905 kb on - strand, within GFF4530 at 169.070 kb on + strand, within GFF4530 at 169.070 kb on + strand, within GFF4530 at 169.070 kb on + strand, within GFF4530 at 169.070 kb on + strand, within GFF4530 at 169.070 kb on + strand, within GFF4530 at 169.070 kb on + strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.071 kb on - strand, within GFF4530 at 169.098 kb on - strand, within GFF4530 at 169.529 kb on + strand, within GFF4530 at 169.530 kb on - strand, within GFF4530 at 169.530 kb on - strand, within GFF4530 at 169.530 kb on - strand, within GFF4530 at 169.530 kb on - strand, within GFF4530 at 169.604 kb on + strand, within GFF4530 at 169.604 kb on + strand, within GFF4530 at 169.733 kb on + strand at 169.827 kb on + strand at 169.827 kb on + strand at 169.828 kb on - strand at 169.828 kb on - strand at 169.828 kb on - strand at 169.925 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.056 kb on + strand, within GFF4531 at 170.057 kb on - strand, within GFF4531 at 170.216 kb on - strand, within GFF4531 at 170.216 kb on - strand, within GFF4531 at 170.521 kb on + strand at 170.522 kb on - strand at 170.522 kb on - strand at 170.522 kb on - strand at 170.522 kb on - strand at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.757 kb on + strand, within GFF4532 at 170.758 kb on - strand, within GFF4532 at 170.758 kb on - strand, within GFF4532 at 171.106 kb on - strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.147 kb on + strand, within GFF4532 at 171.148 kb on - strand, within GFF4532 at 171.405 kb on - strand, within GFF4533
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 168,902 + GFF4530 0.45 +1.1 168,902 + GFF4530 0.45 -0.5 168,903 - GFF4530 0.45 -1.7 168,903 - GFF4530 0.45 -2.9 168,903 - GFF4530 0.45 -2.0 168,903 - GFF4530 0.45 +1.5 168,903 - GFF4530 0.45 +2.6 168,904 + GFF4530 0.45 -2.2 168,904 + GFF4530 0.45 -0.9 168,904 + GFF4530 0.45 -2.3 168,904 + GFF4530 0.45 -1.7 168,904 + GFF4530 0.45 +0.5 168,904 + GFF4530 0.45 -0.7 168,904 + GFF4530 0.45 -1.6 168,904 + GFF4530 0.45 +0.7 168,904 + GFF4530 0.45 -2.0 168,904 + GFF4530 0.45 +0.5 168,905 - GFF4530 0.45 -0.8 168,905 - GFF4530 0.45 -1.7 168,905 - GFF4530 0.45 +1.3 168,905 - GFF4530 0.45 +1.0 169,070 + GFF4530 0.55 +1.2 169,070 + GFF4530 0.55 -1.0 169,070 + GFF4530 0.55 -1.6 169,070 + GFF4530 0.55 -1.5 169,070 + GFF4530 0.55 -1.3 169,070 + GFF4530 0.55 -0.2 169,071 - GFF4530 0.55 +0.6 169,071 - GFF4530 0.55 -0.9 169,071 - GFF4530 0.55 -0.5 169,071 - GFF4530 0.55 +0.2 169,071 - GFF4530 0.55 +0.8 169,071 - GFF4530 0.55 -0.1 169,071 - GFF4530 0.55 +0.0 169,071 - GFF4530 0.55 +3.6 169,071 - GFF4530 0.55 +0.2 169,098 - GFF4530 0.57 -2.3 169,529 + GFF4530 0.82 -1.8 169,530 - GFF4530 0.82 -1.5 169,530 - GFF4530 0.82 -3.6 169,530 - GFF4530 0.82 +1.2 169,530 - GFF4530 0.82 +1.3 169,604 + GFF4530 0.87 -0.7 169,604 + GFF4530 0.87 -2.1 169,733 + -2.6 169,827 + +0.7 169,827 + -0.7 169,828 - -0.8 169,828 - -1.3 169,828 - -0.0 169,925 + GFF4531 0.14 -2.1 170,056 + GFF4531 0.32 -1.1 170,056 + GFF4531 0.32 -0.2 170,056 + GFF4531 0.32 +0.6 170,056 + GFF4531 0.32 -1.8 170,056 + GFF4531 0.32 -1.5 170,056 + GFF4531 0.32 -1.1 170,057 - GFF4531 0.32 -0.6 170,216 - GFF4531 0.54 -0.1 170,216 - GFF4531 0.54 +1.2 170,521 + -1.4 170,522 - -1.1 170,522 - -0.1 170,522 - +0.5 170,522 - +2.6 170,757 + GFF4532 0.13 -2.3 170,757 + GFF4532 0.13 +0.8 170,757 + GFF4532 0.13 -2.2 170,757 + GFF4532 0.13 -1.4 170,757 + GFF4532 0.13 +0.2 170,757 + GFF4532 0.13 +0.7 170,758 - GFF4532 0.13 -2.3 170,758 - GFF4532 0.13 +0.1 171,106 - GFF4532 0.77 +1.4 171,147 + GFF4532 0.84 -1.7 171,147 + GFF4532 0.84 -1.0 171,147 + GFF4532 0.84 +0.6 171,147 + GFF4532 0.84 +1.0 171,148 - GFF4532 0.84 -0.1 171,405 - GFF4533 0.15 +0.2
Or see this region's nucleotide sequence