Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF440 and GFF441 overlap by 4 nucleotides GFF441 and GFF442 overlap by 4 nucleotides GFF442 and GFF443 overlap by 1 nucleotides GFF443 and GFF444 are separated by 54 nucleotides GFF444 and GFF445 are separated by 22 nucleotides
GFF440 - CobN-like chelatase BtuS for metalloporphyrine salvage, at 477,183 to 481,196
GFF440
GFF441 - no description, at 481,193 to 481,546
GFF441
GFF442 - hypothetical transporter PduT for various metalloporphyrins, at 481,543 to 482,016
GFF442
GFF443 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 482,016 to 482,705
GFF443
GFF444 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis, at 482,760 to 483,329
GFF444
GFF445 - Ferrichrome transport ATP-binding protein FhuC, at 483,352 to 484,128
GFF445
Position (kb) 482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 481.233 kb on + strand, within GFF441 at 481.233 kb on + strand, within GFF441 at 481.233 kb on + strand, within GFF441 at 481.233 kb on + strand, within GFF441 at 481.234 kb on - strand, within GFF441 at 481.234 kb on - strand, within GFF441 at 481.234 kb on - strand, within GFF441 at 481.234 kb on - strand, within GFF441 at 481.234 kb on - strand, within GFF441 at 481.613 kb on + strand, within GFF442 at 481.613 kb on + strand, within GFF442 at 481.613 kb on + strand, within GFF442 at 481.613 kb on + strand, within GFF442 at 481.613 kb on + strand, within GFF442 at 481.614 kb on - strand, within GFF442 at 481.614 kb on - strand, within GFF442 at 481.614 kb on - strand, within GFF442 at 481.614 kb on - strand, within GFF442 at 481.895 kb on + strand, within GFF442 at 481.895 kb on + strand, within GFF442 at 481.895 kb on + strand, within GFF442 at 481.895 kb on + strand, within GFF442 at 481.895 kb on + strand, within GFF442 at 481.895 kb on + strand, within GFF442 at 481.896 kb on - strand, within GFF442 at 481.896 kb on - strand, within GFF442 at 481.896 kb on - strand, within GFF442 at 481.896 kb on - strand, within GFF442 at 481.922 kb on + strand, within GFF442 at 481.922 kb on + strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 481.923 kb on - strand, within GFF442 at 482.146 kb on + strand, within GFF443 at 482.147 kb on - strand, within GFF443 at 482.662 kb on + strand at 482.790 kb on - strand at 482.790 kb on - strand at 482.790 kb on - strand at 482.835 kb on - strand, within GFF444 at 482.946 kb on + strand, within GFF444 at 482.947 kb on + strand, within GFF444 at 482.947 kb on + strand, within GFF444 at 482.947 kb on + strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.948 kb on - strand, within GFF444 at 482.959 kb on + strand, within GFF444 at 482.960 kb on - strand, within GFF444 at 482.960 kb on - strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.169 kb on + strand, within GFF444 at 483.170 kb on - strand, within GFF444 at 483.170 kb on - strand, within GFF444 at 483.295 kb on + strand at 483.296 kb on - strand at 483.296 kb on - strand at 483.312 kb on - strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.344 kb on + strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.345 kb on - strand at 483.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 481,233 + GFF441 0.11 -0.5 481,233 + GFF441 0.11 +0.1 481,233 + GFF441 0.11 -0.6 481,233 + GFF441 0.11 -0.2 481,234 - GFF441 0.12 -1.4 481,234 - GFF441 0.12 -1.2 481,234 - GFF441 0.12 -2.0 481,234 - GFF441 0.12 -1.9 481,234 - GFF441 0.12 -2.1 481,613 + GFF442 0.15 -0.1 481,613 + GFF442 0.15 -3.9 481,613 + GFF442 0.15 -0.8 481,613 + GFF442 0.15 -0.6 481,613 + GFF442 0.15 -3.1 481,614 - GFF442 0.15 -3.6 481,614 - GFF442 0.15 +0.8 481,614 - GFF442 0.15 -1.2 481,614 - GFF442 0.15 -0.8 481,895 + GFF442 0.74 -3.0 481,895 + GFF442 0.74 -2.0 481,895 + GFF442 0.74 -0.8 481,895 + GFF442 0.74 -0.1 481,895 + GFF442 0.74 -1.0 481,895 + GFF442 0.74 -1.1 481,896 - GFF442 0.74 -0.8 481,896 - GFF442 0.74 +0.5 481,896 - GFF442 0.74 -2.5 481,896 - GFF442 0.74 +1.0 481,922 + GFF442 0.80 -2.6 481,922 + GFF442 0.80 -1.7 481,923 - GFF442 0.80 +2.0 481,923 - GFF442 0.80 -1.8 481,923 - GFF442 0.80 +2.7 481,923 - GFF442 0.80 +0.4 481,923 - GFF442 0.80 +0.8 481,923 - GFF442 0.80 +0.2 481,923 - GFF442 0.80 -3.7 481,923 - GFF442 0.80 +2.3 482,146 + GFF443 0.19 -1.7 482,147 - GFF443 0.19 -1.0 482,662 + +0.4 482,790 - -1.5 482,790 - -1.0 482,790 - -1.8 482,835 - GFF444 0.13 +0.2 482,946 + GFF444 0.33 -2.2 482,947 + GFF444 0.33 -3.6 482,947 + GFF444 0.33 -2.6 482,947 + GFF444 0.33 -1.2 482,948 - GFF444 0.33 -1.2 482,948 - GFF444 0.33 -1.9 482,948 - GFF444 0.33 -0.6 482,948 - GFF444 0.33 +0.5 482,959 + GFF444 0.35 -1.2 482,960 - GFF444 0.35 -2.1 482,960 - GFF444 0.35 -3.0 483,169 + GFF444 0.72 -1.6 483,169 + GFF444 0.72 +0.9 483,169 + GFF444 0.72 +1.8 483,169 + GFF444 0.72 +0.0 483,170 - GFF444 0.72 -0.4 483,170 - GFF444 0.72 -0.0 483,295 + +0.5 483,296 - -0.8 483,296 - -1.2 483,312 - -2.5 483,344 + -3.2 483,344 + -1.8 483,344 + +0.3 483,344 + -2.8 483,344 + +0.6 483,344 + -1.7 483,344 + +1.7 483,344 + -0.4 483,344 + -1.0 483,345 - -1.6 483,345 - +0.9 483,345 - +3.1 483,345 - -2.9 483,345 - -1.9 483,345 - +3.1 483,345 - -0.8 483,345 - -0.2 483,345 - +0.0 483,345 - -3.5 483,345 - +0.2 483,345 - -2.0 483,345 - -1.0 483,345 - +1.2 483,353 + -1.0
Or see this region's nucleotide sequence