Strain Fitness in Variovorax sp. SCN45 around GFF4424

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
59,563	+		GFF4423	0.21	-1.7
59,563	+		GFF4423	0.21	-0.7
59,563	+		GFF4423	0.21	+0.1
59,564	-		GFF4423	0.21	-0.3
59,564	-		GFF4423	0.21	-1.8
59,662	+		GFF4423	0.29	+0.1
59,662	+		GFF4423	0.29	-0.2
59,662	+		GFF4423	0.29	+0.4
59,662	+		GFF4423	0.29	+1.2
59,662	+		GFF4423	0.29	+0.9
59,662	+		GFF4423	0.29	-0.4
59,662	+		GFF4423	0.29	+0.2
59,662	+		GFF4423	0.29	-1.1
59,662	+		GFF4423	0.29	-0.8
59,662	+		GFF4423	0.29	+1.1
59,662	+		GFF4423	0.29	-0.4
59,662	+		GFF4423	0.29	+2.0
59,662	+		GFF4423	0.29	+0.6
59,662	+		GFF4423	0.29	+1.4
59,662	+		GFF4423	0.29	-0.8
59,662	+		GFF4423	0.29	-0.4
59,662	+		GFF4423	0.29	-0.8
59,663	-		GFF4423	0.29	-0.1
59,663	-		GFF4423	0.29	-1.5
59,663	-		GFF4423	0.29	-1.0
59,663	-		GFF4423	0.29	+0.2
59,663	-		GFF4423	0.29	-1.8
59,663	-		GFF4423	0.29	-1.3
59,663	-		GFF4423	0.29	-0.6
59,663	-		GFF4423	0.29	-0.8
59,663	-		GFF4423	0.29	-1.6
59,663	-		GFF4423	0.29	-2.6
59,663	-		GFF4423	0.29	+0.0
59,663	-		GFF4423	0.29	-0.1
59,663	-		GFF4423	0.29	-2.0
59,700	+		GFF4423	0.32	-0.6
59,701	-		GFF4423	0.32	+0.9
59,701	-		GFF4423	0.32	-0.4
59,925	+		GFF4423	0.50	-0.7
59,925	+		GFF4423	0.50	-0.6
59,925	+		GFF4423	0.50	+0.0
59,925	+		GFF4423	0.50	-0.1
59,971	+		GFF4423	0.53	-0.6
59,971	+		GFF4423	0.53	-0.2
59,971	+		GFF4423	0.53	+0.6
59,971	+		GFF4423	0.53	-0.4
60,070	+		GFF4423	0.61	-2.0
60,070	+		GFF4423	0.61	+0.0
60,070	+		GFF4423	0.61	-0.8
60,070	+		GFF4423	0.61	+0.4
60,070	+		GFF4423	0.61	-0.7
60,070	+		GFF4423	0.61	-0.6
60,070	+		GFF4423	0.61	-2.8
60,071	-		GFF4423	0.61	-2.7
60,071	-		GFF4423	0.61	-2.3
60,071	-		GFF4423	0.61	+0.8
60,071	-		GFF4423	0.61	-0.9
60,071	-		GFF4423	0.61	-2.4
60,071	-		GFF4423	0.61	+0.7
60,071	-		GFF4423	0.61	-1.3
60,071	-		GFF4423	0.61	-0.4
60,071	-		GFF4423	0.61	+0.6
60,071	-		GFF4423	0.61	+0.8
60,130	+		GFF4423	0.66	+1.2
60,130	+		GFF4423	0.66	-2.8
60,130	+		GFF4423	0.66	+0.9
60,130	+		GFF4423	0.66	-0.1
60,130	+		GFF4423	0.66	-0.1
60,130	+		GFF4423	0.66	-1.9
60,130	+		GFF4423	0.66	-0.1
60,130	+		GFF4423	0.66	+0.5
60,131	-		GFF4423	0.66	+1.2
60,148	+		GFF4423	0.67	+1.9
60,148	+		GFF4423	0.67	-1.0
60,148	+		GFF4423	0.67	-0.9
60,148	+		GFF4423	0.67	+0.6
60,148	+		GFF4423	0.67	+1.2
60,148	+		GFF4423	0.67	+2.2
60,149	-		GFF4423	0.67	+3.2
60,149	-		GFF4423	0.67	-1.2
60,149	-		GFF4423	0.67	-0.8
60,248	-		GFF4423	0.75	+0.5
60,248	-		GFF4423	0.75	+2.5
60,264	+		GFF4423	0.76	+1.1
60,264	+		GFF4423	0.76	-1.1
60,264	+		GFF4423	0.76	-0.2
60,264	+		GFF4423	0.76	+1.6
60,265	-		GFF4423	0.76	+1.6
60,265	-		GFF4423	0.76	+3.3
60,265	-		GFF4423	0.76	+0.1
60,265	-		GFF4423	0.76	-0.2
60,265	-		GFF4423	0.76	+1.1
60,265	-		GFF4423	0.76	+1.0
60,265	-		GFF4423	0.76	-0.4
60,265	-		GFF4423	0.76	-1.4
60,265	-		GFF4423	0.76	-1.4
60,265	-		GFF4423	0.76	+1.2
60,265	-		GFF4423	0.76	+0.2
60,265	-		GFF4423	0.76	-0.6
60,274	+		GFF4423	0.77	+0.9
60,274	+		GFF4423	0.77	-2.4
60,274	+		GFF4423	0.77	-0.9
60,274	+		GFF4423	0.77	-1.8
60,274	+		GFF4423	0.77	-0.4
60,274	+		GFF4423	0.77	-1.3
60,274	+		GFF4423	0.77	-1.1
60,275	-		GFF4423	0.77	+1.2
60,275	-		GFF4423	0.77	+0.8
60,275	-		GFF4423	0.77	+1.9
60,275	-		GFF4423	0.77	+1.2
60,275	-		GFF4423	0.77	-0.2
60,275	-		GFF4423	0.77	-0.8
60,526	+				-0.8
60,526	+				-2.4
60,527	-				-0.2
60,527	-				-0.5
60,527	-				-1.5
60,527	-				-2.6
60,527	-				-1.1
60,527	-				+0.7
60,541	+				+0.6
60,541	+				+0.0
60,541	+				-1.0
60,541	+				+1.3
60,541	+				+0.2
60,542	-				-1.3
60,542	-				-2.1
60,542	-				-1.7
60,542	-				-0.9
60,542	-				+1.1
60,542	-				-0.7
60,577	+				+1.4
60,577	+				+0.7
60,577	+				+0.2
60,577	+				+0.5
60,578	-				+0.5
60,660	+		GFF4424	0.40	-1.7
60,660	+		GFF4424	0.40	-1.6
60,684	+		GFF4424	0.50	+0.3
60,684	+		GFF4424	0.50	+0.9
60,684	+		GFF4424	0.50	+0.6
60,684	+		GFF4424	0.50	+0.5
60,684	+		GFF4424	0.50	-0.2
60,684	+		GFF4424	0.50	-0.7
60,684	+		GFF4424	0.50	-0.1
60,684	+		GFF4424	0.50	+2.2
60,684	+		GFF4424	0.50	-0.4
60,685	-		GFF4424	0.50	-1.3
60,685	-		GFF4424	0.50	+0.1
60,685	-		GFF4424	0.50	-0.5
60,685	-		GFF4424	0.50	+1.2
60,685	-		GFF4424	0.50	-2.0
60,685	-		GFF4424	0.50	+0.9
60,727	+		GFF4424	0.67	+1.3
60,727	+		GFF4424	0.67	-1.7
60,727	+		GFF4424	0.67	-2.8
60,727	+		GFF4424	0.67	-3.0
60,727	+		GFF4424	0.67	-1.2
60,727	+		GFF4424	0.67	-0.6
60,727	+		GFF4424	0.67	-0.1
60,727	+		GFF4424	0.67	-2.0
60,727	+		GFF4424	0.67	+0.7
60,727	+		GFF4424	0.67	+0.2
60,727	+		GFF4424	0.67	+0.3
60,727	+		GFF4424	0.67	+0.2
60,727	+		GFF4424	0.67	+0.9
60,727	+		GFF4424	0.67	+0.6
60,728	-		GFF4424	0.68	-0.4
60,728	-		GFF4424	0.68	+1.2
60,728	-		GFF4424	0.68	+0.4
60,728	-		GFF4424	0.68	+0.5
60,728	-		GFF4424	0.68	-0.2
60,728	-		GFF4424	0.68	-2.0
60,728	-		GFF4424	0.68	+0.7
60,728	-		GFF4424	0.68	+1.4
60,728	-		GFF4424	0.68	-0.4
60,728	-		GFF4424	0.68	+0.8
60,728	-		GFF4424	0.68	+0.6
60,728	-		GFF4424	0.68	-0.6
60,728	-		GFF4424	0.68	-1.7
60,728	-		GFF4424	0.68	+2.2
60,728	-		GFF4424	0.68	+2.2
60,728	-		GFF4424	0.68	-3.5
60,728	-		GFF4424	0.68	+0.9
60,728	-		GFF4424	0.68	+0.5
60,728	-		GFF4424	0.68	+1.1
60,728	-		GFF4424	0.68	-0.4
60,728	-		GFF4424	0.68	+1.5
60,728	-		GFF4424	0.68	-2.1
60,728	-		GFF4424	0.68	+1.2
60,947	+				-0.1
60,948	-				+0.6
60,948	-				-2.3
60,948	-				+0.9
60,958	+				+0.0
60,959	-				+0.4
60,959	-				-0.0
60,959	-				+0.9
60,959	-				-0.4
60,959	-				+0.1
60,959	-				+0.3
60,959	-				-2.3
60,997	+				-1.6
61,002	+				+0.8
61,002	+				+0.7
61,002	+				-1.6
61,002	+				-0.5
61,002	+				+0.8
61,002	+				-0.3
61,003	-				-2.2
61,003	-				-0.0
61,003	-				-1.2
61,003	-				-1.5
61,003	-				-0.3
61,003	-				+0.4
61,007	+				+2.3
61,007	+				-0.2
61,007	+				+0.8
61,007	+				+0.4
61,007	+				-3.2
61,007	+				+2.2
61,007	+				-0.4
61,007	+				-0.7
61,007	+				+0.6
61,007	+				-0.0
61,007	+				+0.5
61,007	+				+0.6
61,007	+				-1.0
61,007	+				-1.4
61,007	+				-0.7
61,007	+				+0.5
61,008	-				-0.9
61,008	-				-1.7
61,008	-				+0.5
61,008	-				+0.2
61,008	-				-0.1
61,008	-				-1.8
61,008	-				+0.5
61,008	-				+0.2
61,008	-				+1.4
61,008	-				-2.0
61,008	-				-0.5
61,008	-				+0.0
61,008	-				-1.6
61,008	-				-0.5
61,008	-				-1.1
61,008	-				-0.5
61,008	-				+0.5
61,008	-				-1.7
61,017	+				-1.6
61,017	+				-0.9
61,017	+				-2.2
61,017	+				-0.4
61,017	+				+1.3
61,017	+				-2.2
61,017	+				+0.7
61,018	-				+1.1
61,018	-				-0.6
61,018	-				+0.1
61,018	-				-1.4
61,018	-				-1.4
61,124	-				-1.0
61,219	-				-0.4
61,219	-				-2.0
61,219	-				+0.1
61,219	-				-1.8
61,245	+				-1.3
61,245	+				+1.8
61,245	+				+1.3
61,245	+				+0.4
61,245	+				-1.3
61,245	+				+1.8
61,245	+				+1.4
61,245	+				-2.1
61,246	-				+1.7
61,246	-				-0.9
61,246	-				-2.0
61,246	-				-0.2
61,246	-				-0.4
61,246	-				-2.0
61,246	-				+3.4
61,246	-				+0.2
61,246	-				-2.0
61,443	+		GFF4425	0.15	+2.0
61,539	+		GFF4425	0.19	-2.2
61,539	+		GFF4425	0.19	-2.3
61,540	-		GFF4425	0.19	-0.6
61,540	-		GFF4425	0.19	-0.2
61,549	+		GFF4425	0.19	+0.2
61,550	-		GFF4425	0.19	+0.2
61,803	+		GFF4425	0.30	-0.6
61,803	+		GFF4425	0.30	-0.0
61,803	+		GFF4425	0.30	+0.4
61,803	+		GFF4425	0.30	-2.3
61,803	+		GFF4425	0.30	-0.2
61,803	+		GFF4425	0.30	+1.6
61,803	+		GFF4425	0.30	-1.0
61,803	+		GFF4425	0.30	+0.7
61,803	+		GFF4425	0.30	+2.1
61,803	+		GFF4425	0.30	-1.8
61,803	+		GFF4425	0.30	+0.3
61,803	+		GFF4425	0.30	-0.4
61,803	+		GFF4425	0.30	+0.9
61,803	+		GFF4425	0.30	-1.1
61,803	+		GFF4425	0.30	-0.0
61,803	+		GFF4425	0.30	-1.1
61,803	+		GFF4425	0.30	-0.1
61,804	-		GFF4425	0.30	+1.5
61,804	-		GFF4425	0.30	-0.5
61,804	-		GFF4425	0.30	+0.2
61,804	-		GFF4425	0.30	-0.5
61,804	-		GFF4425	0.30	-2.2
61,804	-		GFF4425	0.30	-1.8
61,804	-		GFF4425	0.30	+0.5
61,804	-		GFF4425	0.30	-0.2
61,804	-		GFF4425	0.30	-2.0
61,804	-		GFF4425	0.30	-1.5
61,804	-		GFF4425	0.30	+1.1
61,804	-		GFF4425	0.30	-0.5
61,804	-		GFF4425	0.30	-2.4
61,804	-		GFF4425	0.30	-1.3