Strain Fitness in Variovorax sp. SCN45 around GFF4371

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4371 and GFF4372 are separated by 29 nucleotides GFF4371 - FIG074102: hypothetical protein, at 98 to 232 GFF4371 GFF4372 - ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12), at 262 to 2,061 GFF4372 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.059 kb on + strandat 0.125 kb on + strand, within GFF4371at 0.125 kb on + strand, within GFF4371at 0.125 kb on + strand, within GFF4371at 0.125 kb on + strand, within GFF4371at 0.125 kb on + strand, within GFF4371at 0.125 kb on + strand, within GFF4371at 0.126 kb on - strand, within GFF4371at 0.126 kb on - strand, within GFF4371at 0.126 kb on - strand, within GFF4371at 0.126 kb on - strand, within GFF4371at 0.126 kb on - strand, within GFF4371at 0.126 kb on - strand, within GFF4371at 0.131 kb on - strand, within GFF4371at 0.131 kb on - strand, within GFF4371at 0.131 kb on - strand, within GFF4371at 0.175 kb on + strand, within GFF4371at 0.256 kb on + strandat 0.256 kb on + strandat 0.256 kb on + strandat 0.256 kb on + strandat 0.257 kb on - strandat 0.257 kb on - strandat 0.257 kb on - strandat 0.257 kb on - strandat 0.257 kb on - strandat 0.263 kb on + strandat 0.263 kb on + strandat 0.264 kb on - strandat 0.264 kb on - strandat 0.264 kb on - strandat 0.264 kb on - strandat 0.288 kb on + strandat 0.288 kb on + strandat 0.288 kb on + strandat 0.289 kb on - strandat 0.318 kb on - strandat 0.332 kb on + strandat 0.342 kb on + strandat 0.342 kb on + strandat 0.342 kb on + strandat 0.343 kb on - strandat 0.343 kb on - strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.398 kb on + strandat 0.399 kb on - strandat 0.399 kb on - strandat 0.399 kb on - strandat 0.399 kb on - strandat 0.399 kb on - strandat 0.470 kb on + strand, within GFF4372at 0.470 kb on + strand, within GFF4372at 0.470 kb on + strand, within GFF4372at 0.471 kb on - strand, within GFF4372at 0.471 kb on - strand, within GFF4372at 0.471 kb on - strand, within GFF4372at 0.471 kb on - strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.522 kb on + strand, within GFF4372at 0.523 kb on - strand, within GFF4372at 0.523 kb on - strand, within GFF4372at 0.523 kb on - strand, within GFF4372at 0.523 kb on - strand, within GFF4372at 0.523 kb on - strand, within GFF4372at 0.523 kb on - strand, within GFF4372at 0.523 kb on - strand, within GFF4372at 0.527 kb on - strand, within GFF4372at 0.675 kb on - strand, within GFF4372at 0.719 kb on + strand, within GFF4372at 0.719 kb on + strand, within GFF4372at 0.719 kb on + strand, within GFF4372at 0.719 kb on + strand, within GFF4372at 0.720 kb on - strand, within GFF4372at 0.720 kb on - strand, within GFF4372at 0.720 kb on - strand, within GFF4372at 0.720 kb on - strand, within GFF4372at 0.827 kb on - strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.857 kb on + strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.858 kb on - strand, within GFF4372at 0.879 kb on + strand, within GFF4372at 0.879 kb on + strand, within GFF4372at 0.902 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.024 kb on + strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.025 kb on - strand, within GFF4372at 1.190 kb on + strand, within GFF4372at 1.190 kb on + strand, within GFF4372at 1.190 kb on + strand, within GFF4372at 1.190 kb on + strand, within GFF4372at 1.190 kb on + strand, within GFF4372at 1.191 kb on - strand, within GFF4372at 1.191 kb on - strand, within GFF4372at 1.191 kb on - strand, within GFF4372at 1.191 kb on - strand, within GFF4372at 1.191 kb on - strand, within GFF4372at 1.202 kb on + strand, within GFF4372at 1.203 kb on - strand, within GFF4372at 1.203 kb on - strand, within GFF4372at 1.229 kb on + strand, within GFF4372at 1.230 kb on - strand, within GFF4372at 1.230 kb on - strand, within GFF4372at 1.230 kb on - strand, within GFF4372at 1.230 kb on - strand, within GFF4372

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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59 + -2.1
59 + +0.6
59 + +1.9
59 + -0.8
59 + -0.2
59 + +2.7
59 + -0.5
59 + +1.7
59 + +1.6
59 + -2.8
125 + GFF4371 0.20 -0.0
125 + GFF4371 0.20 +0.0
125 + GFF4371 0.20 +0.7
125 + GFF4371 0.20 -0.4
125 + GFF4371 0.20 +1.1
125 + GFF4371 0.20 -3.1
126 - GFF4371 0.21 +0.6
126 - GFF4371 0.21 -0.0
126 - GFF4371 0.21 +0.5
126 - GFF4371 0.21 -0.3
126 - GFF4371 0.21 -0.1
126 - GFF4371 0.21 -1.7
131 - GFF4371 0.24 +1.1
131 - GFF4371 0.24 -0.8
131 - GFF4371 0.24 -2.8
175 + GFF4371 0.57 -1.3
256 + -1.8
256 + +0.2
256 + +0.5
256 + -1.8
257 - +0.3
257 - -2.0
257 - +2.0
257 - +0.7
257 - -0.9
263 + +1.2
263 + +0.2
264 - +0.4
264 - -0.8
264 - -2.1
264 - -3.0
288 + +0.6
288 + -3.0
288 + +1.2
289 - -1.6
318 - -2.0
332 + -1.0
342 + +0.2
342 + +2.3
342 + -0.8
343 - +1.6
343 - +1.5
398 + -0.4
398 + -0.0
398 + -0.1
398 + +0.9
398 + -0.8
398 + +1.8
398 + -3.2
398 + -1.2
398 + -1.4
398 + -1.3
399 - -0.0
399 - +1.0
399 - -1.9
399 - +0.1
399 - -2.0
470 + GFF4372 0.12 -1.8
470 + GFF4372 0.12 -0.6
470 + GFF4372 0.12 -0.1
471 - GFF4372 0.12 -2.3
471 - GFF4372 0.12 -1.2
471 - GFF4372 0.12 -0.1
471 - GFF4372 0.12 -0.3
522 + GFF4372 0.14 -3.5
522 + GFF4372 0.14 -1.7
522 + GFF4372 0.14 +0.2
522 + GFF4372 0.14 -0.4
522 + GFF4372 0.14 +0.1
522 + GFF4372 0.14 -0.7
522 + GFF4372 0.14 -0.3
522 + GFF4372 0.14 -1.4
523 - GFF4372 0.14 -0.4
523 - GFF4372 0.14 -0.5
523 - GFF4372 0.14 -0.5
523 - GFF4372 0.14 +0.8
523 - GFF4372 0.14 +0.9
523 - GFF4372 0.14 +0.3
523 - GFF4372 0.14 -0.4
527 - GFF4372 0.15 +0.7
675 - GFF4372 0.23 -2.6
719 + GFF4372 0.25 -2.2
719 + GFF4372 0.25 -3.4
719 + GFF4372 0.25 -0.1
719 + GFF4372 0.25 -0.6
720 - GFF4372 0.25 +2.0
720 - GFF4372 0.25 -1.4
720 - GFF4372 0.25 -0.1
720 - GFF4372 0.25 +1.4
827 - GFF4372 0.31 -0.4
857 + GFF4372 0.33 -1.5
857 + GFF4372 0.33 +0.2
857 + GFF4372 0.33 +1.3
857 + GFF4372 0.33 +1.4
857 + GFF4372 0.33 -1.5
857 + GFF4372 0.33 -0.7
857 + GFF4372 0.33 -2.4
857 + GFF4372 0.33 +0.2
857 + GFF4372 0.33 -1.1
857 + GFF4372 0.33 -2.2
857 + GFF4372 0.33 -2.4
857 + GFF4372 0.33 -0.1
857 + GFF4372 0.33 -2.2
857 + GFF4372 0.33 -1.4
857 + GFF4372 0.33 -2.4
857 + GFF4372 0.33 -2.6
857 + GFF4372 0.33 -1.0
857 + GFF4372 0.33 -2.7
857 + GFF4372 0.33 +0.0
857 + GFF4372 0.33 +1.3
857 + GFF4372 0.33 -1.2
857 + GFF4372 0.33 -0.1
857 + GFF4372 0.33 -2.0
857 + GFF4372 0.33 -1.7
857 + GFF4372 0.33 -0.8
858 - GFF4372 0.33 +1.6
858 - GFF4372 0.33 -0.8
858 - GFF4372 0.33 -1.9
858 - GFF4372 0.33 -0.6
858 - GFF4372 0.33 -1.1
858 - GFF4372 0.33 -1.5
858 - GFF4372 0.33 +2.1
858 - GFF4372 0.33 +0.1
858 - GFF4372 0.33 -0.1
858 - GFF4372 0.33 +0.3
858 - GFF4372 0.33 -0.1
858 - GFF4372 0.33 -0.3
858 - GFF4372 0.33 -0.7
858 - GFF4372 0.33 -2.7
858 - GFF4372 0.33 -2.3
879 + GFF4372 0.34 +0.6
879 + GFF4372 0.34 -0.4
902 + GFF4372 0.36 -1.5
1,024 + GFF4372 0.42 +1.2
1,024 + GFF4372 0.42 -1.3
1,024 + GFF4372 0.42 +1.6
1,024 + GFF4372 0.42 -0.2
1,024 + GFF4372 0.42 -0.5
1,024 + GFF4372 0.42 +1.2
1,024 + GFF4372 0.42 -1.8
1,024 + GFF4372 0.42 -0.1
1,024 + GFF4372 0.42 +0.7
1,024 + GFF4372 0.42 +1.9
1,024 + GFF4372 0.42 +1.3
1,025 - GFF4372 0.42 +0.4
1,025 - GFF4372 0.42 +0.6
1,025 - GFF4372 0.42 -1.9
1,025 - GFF4372 0.42 -0.4
1,025 - GFF4372 0.42 -0.9
1,025 - GFF4372 0.42 +0.3
1,025 - GFF4372 0.42 -1.0
1,025 - GFF4372 0.42 -1.2
1,025 - GFF4372 0.42 -0.8
1,190 + GFF4372 0.52 -0.4
1,190 + GFF4372 0.52 +1.7
1,190 + GFF4372 0.52 -1.4
1,190 + GFF4372 0.52 -1.5
1,190 + GFF4372 0.52 +0.6
1,191 - GFF4372 0.52 +1.6
1,191 - GFF4372 0.52 -0.2
1,191 - GFF4372 0.52 -0.4
1,191 - GFF4372 0.52 -0.4
1,191 - GFF4372 0.52 +0.4
1,202 + GFF4372 0.52 -2.0
1,203 - GFF4372 0.52 -0.5
1,203 - GFF4372 0.52 -3.2
1,229 + GFF4372 0.54 -1.1
1,230 - GFF4372 0.54 -0.4
1,230 - GFF4372 0.54 +0.3
1,230 - GFF4372 0.54 -1.0
1,230 - GFF4372 0.54 +0.0

Or see this region's nucleotide sequence