Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF425 and GFF426 overlap by 4 nucleotides GFF426 and GFF427 are separated by 122 nucleotides GFF427 and GFF428 are separated by 77 nucleotides
GFF425 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 460,610 to 461,659
GFF425
GFF426 - Cobyric acid synthase (EC 6.3.5.10), at 461,656 to 463,146
GFF426
GFF427 - no description, at 463,269 to 463,499
GFF427
GFF428 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 463,577 to 465,073
GFF428
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.799 kb on + strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.800 kb on - strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.801 kb on + strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.802 kb on - strand at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.805 kb on + strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.806 kb on - strand, within GFF426 at 461.915 kb on + strand, within GFF426 at 462.324 kb on - strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.569 kb on + strand, within GFF426 at 462.570 kb on - strand, within GFF426 at 462.570 kb on - strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.917 kb on + strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 462.918 kb on - strand, within GFF426 at 463.013 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.231 kb on + strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.232 kb on - strand at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.294 kb on + strand, within GFF427 at 463.295 kb on - strand, within GFF427 at 463.295 kb on - strand, within GFF427 at 463.381 kb on - strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.389 kb on + strand, within GFF427 at 463.390 kb on - strand, within GFF427 at 463.390 kb on - strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.419 kb on + strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.420 kb on - strand, within GFF427 at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.680 kb on + strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.681 kb on - strand at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.764 kb on + strand, within GFF428 at 463.765 kb on - strand, within GFF428 at 463.765 kb on - strand, within GFF428 at 463.914 kb on + strand, within GFF428 at 463.914 kb on + strand, within GFF428 at 463.915 kb on - strand, within GFF428 at 463.915 kb on - strand, within GFF428 at 464.064 kb on + strand, within GFF428
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 461,799 + -1.2 461,799 + -1.9 461,799 + -3.3 461,799 + +1.8 461,799 + -0.4 461,799 + -1.6 461,799 + -2.4 461,799 + +0.5 461,799 + -1.6 461,800 - -2.5 461,800 - -1.6 461,800 - -0.9 461,800 - -1.4 461,800 - -1.4 461,800 - -5.6 461,800 - -1.6 461,800 - +0.6 461,800 - -2.2 461,800 - -3.1 461,801 + -0.4 461,801 + -3.6 461,801 + -1.2 461,801 + +0.1 461,801 + -1.8 461,801 + -1.2 461,801 + -0.8 461,801 + -3.0 461,801 + -0.8 461,801 + -1.9 461,801 + +0.2 461,801 + -1.5 461,801 + -0.6 461,801 + -1.4 461,801 + -2.1 461,801 + +1.8 461,801 + +1.5 461,801 + +0.9 461,801 + -2.1 461,801 + +0.3 461,801 + -1.7 461,801 + +0.1 461,801 + -1.4 461,802 - -0.1 461,802 - -2.5 461,802 - -1.0 461,802 - -1.3 461,802 - -0.2 461,802 - +3.3 461,802 - -2.3 461,802 - +0.4 461,802 - -1.6 461,802 - -0.1 461,802 - -3.6 461,802 - -2.6 461,802 - -0.9 461,802 - -1.0 461,802 - +0.3 461,802 - -2.9 461,802 - -1.8 461,802 - +0.0 461,802 - -2.1 461,802 - +0.8 461,802 - -3.6 461,802 - -1.6 461,802 - -0.6 461,802 - -1.0 461,802 - +0.3 461,802 - -2.0 461,805 + GFF426 0.10 +0.5 461,805 + GFF426 0.10 -2.0 461,805 + GFF426 0.10 -0.6 461,805 + GFF426 0.10 -2.6 461,805 + GFF426 0.10 +0.2 461,805 + GFF426 0.10 -1.1 461,806 - GFF426 0.10 +1.8 461,806 - GFF426 0.10 -2.1 461,806 - GFF426 0.10 +0.5 461,806 - GFF426 0.10 -1.0 461,806 - GFF426 0.10 -0.6 461,915 + GFF426 0.17 -2.0 462,324 - GFF426 0.45 -0.8 462,569 + GFF426 0.61 -3.9 462,569 + GFF426 0.61 -0.8 462,569 + GFF426 0.61 -1.2 462,570 - GFF426 0.61 -1.1 462,570 - GFF426 0.61 -0.9 462,917 + GFF426 0.85 -2.2 462,917 + GFF426 0.85 -1.7 462,917 + GFF426 0.85 -0.4 462,918 - GFF426 0.85 -1.2 462,918 - GFF426 0.85 +1.4 462,918 - GFF426 0.85 -0.3 462,918 - GFF426 0.85 -1.1 463,013 + -2.1 463,231 + +0.0 463,231 + +0.3 463,231 + -1.2 463,231 + +0.8 463,232 - -1.8 463,232 - -1.4 463,232 - -1.2 463,232 - -1.3 463,232 - -1.0 463,232 - +0.8 463,294 + GFF427 0.11 -1.7 463,294 + GFF427 0.11 -0.2 463,294 + GFF427 0.11 -1.4 463,294 + GFF427 0.11 -1.2 463,294 + GFF427 0.11 -0.6 463,294 + GFF427 0.11 +1.1 463,294 + GFF427 0.11 -0.9 463,295 - GFF427 0.11 -0.2 463,295 - GFF427 0.11 -1.9 463,381 - GFF427 0.48 -1.0 463,389 + GFF427 0.52 -1.2 463,389 + GFF427 0.52 +1.5 463,389 + GFF427 0.52 -1.4 463,389 + GFF427 0.52 -0.1 463,390 - GFF427 0.52 -0.1 463,390 - GFF427 0.52 +0.4 463,419 + GFF427 0.65 +0.2 463,419 + GFF427 0.65 +0.1 463,419 + GFF427 0.65 -0.4 463,420 - GFF427 0.65 -0.6 463,420 - GFF427 0.65 -1.0 463,420 - GFF427 0.65 -1.9 463,680 + -1.2 463,680 + +0.8 463,680 + -0.5 463,680 + -0.8 463,680 + -2.0 463,681 - -0.1 463,681 - -3.5 463,681 - +1.8 463,681 - -0.7 463,764 + GFF428 0.12 +0.5 463,764 + GFF428 0.12 +0.2 463,764 + GFF428 0.12 +0.7 463,764 + GFF428 0.12 -1.2 463,764 + GFF428 0.12 -0.5 463,764 + GFF428 0.12 -0.0 463,765 - GFF428 0.13 -2.8 463,765 - GFF428 0.13 +1.4 463,914 + GFF428 0.23 +0.0 463,914 + GFF428 0.23 +0.6 463,915 - GFF428 0.23 -0.9 463,915 - GFF428 0.23 +1.8 464,064 + GFF428 0.33 +2.6
Or see this region's nucleotide sequence