Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4184 and GFF4185 are separated by 125 nucleotides GFF4185 and GFF4186 are separated by 40 nucleotides GFF4186 and GFF4187 are separated by 32 nucleotides GFF4187 and GFF4188 are separated by 371 nucleotides
GFF4184 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 89,094 to 102,362
GFF4184
GFF4185 - RNA polymerase ECF-type sigma factor, at 102,488 to 103,123
GFF4185
GFF4186 - no description, at 103,164 to 103,364
GFF4186
GFF4187 - hypothetical protein, at 103,397 to 103,651
GFF4187
GFF4188 - Signal peptidase I (EC 3.4.21.89), at 104,023 to 104,688
GFF4188
Position (kb) 102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.502 kb on + strand at 101.503 kb on - strand at 101.503 kb on - strand at 101.503 kb on - strand at 101.503 kb on - strand at 101.503 kb on - strand at 101.503 kb on - strand at 101.574 kb on + strand at 101.574 kb on + strand at 101.575 kb on - strand at 101.575 kb on - strand at 101.575 kb on - strand at 101.770 kb on - strand at 101.790 kb on + strand at 101.790 kb on + strand at 101.790 kb on + strand at 101.791 kb on - strand at 102.314 kb on - strand at 102.478 kb on + strand at 102.478 kb on + strand at 102.479 kb on - strand at 102.479 kb on - strand at 102.507 kb on - strand at 102.507 kb on - strand at 102.602 kb on + strand, within GFF4185 at 102.602 kb on + strand, within GFF4185 at 102.728 kb on + strand, within GFF4185 at 102.728 kb on + strand, within GFF4185 at 102.728 kb on + strand, within GFF4185 at 102.729 kb on - strand, within GFF4185 at 102.729 kb on - strand, within GFF4185 at 102.732 kb on + strand, within GFF4185 at 102.732 kb on + strand, within GFF4185 at 102.732 kb on + strand, within GFF4185 at 102.733 kb on - strand, within GFF4185 at 102.733 kb on - strand, within GFF4185 at 102.733 kb on - strand, within GFF4185 at 102.733 kb on - strand, within GFF4185 at 102.733 kb on - strand, within GFF4185 at 102.733 kb on - strand, within GFF4185 at 102.733 kb on - strand, within GFF4185 at 102.734 kb on + strand, within GFF4185 at 102.735 kb on - strand, within GFF4185 at 102.735 kb on - strand, within GFF4185 at 102.981 kb on - strand, within GFF4185 at 103.031 kb on + strand, within GFF4185 at 103.031 kb on + strand, within GFF4185 at 103.425 kb on + strand, within GFF4187 at 103.459 kb on - strand, within GFF4187 at 103.618 kb on + strand, within GFF4187 at 103.618 kb on + strand, within GFF4187 at 103.710 kb on - strand at 103.784 kb on + strand at 103.785 kb on - strand at 103.785 kb on - strand at 103.785 kb on - strand at 103.958 kb on + strand at 103.958 kb on + strand at 103.958 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 101,502 + +0.4 101,502 + +2.7 101,502 + -0.5 101,502 + +1.0 101,502 + -2.4 101,502 + -1.9 101,502 + -1.1 101,502 + +1.0 101,502 + -0.2 101,502 + -0.4 101,502 + -1.8 101,503 - -0.9 101,503 - +0.6 101,503 - -0.0 101,503 - +0.0 101,503 - +1.1 101,503 - -1.0 101,574 + +1.4 101,574 + +1.1 101,575 - -0.3 101,575 - +2.7 101,575 - +0.1 101,770 - +2.7 101,790 + +0.7 101,790 + -2.4 101,790 + +2.1 101,791 - -0.7 102,314 - -1.3 102,478 + -0.9 102,478 + +1.8 102,479 - -0.4 102,479 - -1.1 102,507 - -2.5 102,507 - -2.0 102,602 + GFF4185 0.18 +0.1 102,602 + GFF4185 0.18 -2.8 102,728 + GFF4185 0.38 -0.8 102,728 + GFF4185 0.38 -2.6 102,728 + GFF4185 0.38 +1.7 102,729 - GFF4185 0.38 -3.3 102,729 - GFF4185 0.38 +0.1 102,732 + GFF4185 0.38 -2.0 102,732 + GFF4185 0.38 -0.2 102,732 + GFF4185 0.38 -2.6 102,733 - GFF4185 0.39 -1.7 102,733 - GFF4185 0.39 +1.1 102,733 - GFF4185 0.39 -1.1 102,733 - GFF4185 0.39 -2.5 102,733 - GFF4185 0.39 -2.6 102,733 - GFF4185 0.39 +0.0 102,733 - GFF4185 0.39 -0.7 102,734 + GFF4185 0.39 +0.1 102,735 - GFF4185 0.39 -0.6 102,735 - GFF4185 0.39 -2.7 102,981 - GFF4185 0.78 +0.5 103,031 + GFF4185 0.85 +0.1 103,031 + GFF4185 0.85 -2.1 103,425 + GFF4187 0.11 -1.2 103,459 - GFF4187 0.24 +1.1 103,618 + GFF4187 0.87 -1.5 103,618 + GFF4187 0.87 -0.9 103,710 - -2.3 103,784 + -0.2 103,785 - -0.9 103,785 - -1.8 103,785 - -0.5 103,958 + -0.8 103,958 + -1.9 103,958 + +0.3
Or see this region's nucleotide sequence