Strain Fitness in Variovorax sp. SCN45 around GFF418

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF417 and GFF418 are separated by 109 nucleotidesGFF418 and GFF419 are separated by 30 nucleotidesGFF419 and GFF420 are separated by 27 nucleotides GFF417 - Aspartate aminotransferase (AspB-4) (EC 2.6.1.1), at 451,888 to 453,075 GFF417 GFF418 - Endonuclease III (EC 4.2.99.18), at 453,185 to 453,832 GFF418 GFF419 - hypothetical protein, at 453,863 to 454,711 GFF419 GFF420 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 454,739 to 456,301 GFF420 Position (kb) 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.234 kb on + strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.235 kb on - strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.456 kb on + strand, within GFF417at 452.457 kb on - strand, within GFF417at 452.457 kb on - strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.498 kb on + strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.499 kb on - strand, within GFF417at 452.582 kb on + strand, within GFF417at 452.582 kb on + strand, within GFF417at 452.582 kb on + strand, within GFF417at 452.582 kb on + strand, within GFF417at 452.583 kb on - strand, within GFF417at 452.678 kb on + strand, within GFF417at 452.678 kb on + strand, within GFF417at 452.679 kb on - strand, within GFF417at 452.870 kb on + strand, within GFF417at 452.870 kb on + strand, within GFF417at 452.871 kb on - strand, within GFF417at 452.871 kb on - strand, within GFF417at 452.871 kb on - strand, within GFF417at 452.888 kb on + strand, within GFF417at 452.888 kb on + strand, within GFF417at 452.888 kb on + strand, within GFF417at 452.888 kb on + strand, within GFF417at 453.124 kb on + strandat 453.124 kb on + strandat 453.125 kb on - strandat 453.134 kb on + strandat 453.156 kb on + strandat 453.156 kb on + strandat 453.156 kb on + strandat 453.156 kb on + strandat 453.156 kb on + strandat 453.156 kb on + strandat 453.157 kb on - strandat 453.157 kb on - strandat 453.157 kb on - strandat 453.158 kb on + strandat 453.158 kb on + strandat 453.158 kb on + strandat 453.159 kb on - strandat 453.159 kb on - strandat 453.159 kb on - strandat 453.159 kb on - strandat 453.159 kb on - strandat 453.260 kb on + strand, within GFF418at 453.260 kb on + strand, within GFF418at 453.260 kb on + strand, within GFF418at 453.260 kb on + strand, within GFF418at 453.260 kb on + strand, within GFF418at 453.261 kb on - strand, within GFF418at 453.261 kb on - strand, within GFF418at 453.261 kb on - strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.377 kb on + strand, within GFF418at 453.378 kb on - strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.407 kb on + strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.408 kb on - strand, within GFF418at 453.428 kb on + strand, within GFF418at 453.429 kb on - strand, within GFF418at 453.495 kb on + strand, within GFF418at 453.495 kb on + strand, within GFF418at 453.496 kb on - strand, within GFF418at 453.496 kb on - strand, within GFF418at 453.496 kb on - strand, within GFF418at 453.695 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.737 kb on + strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.738 kb on - strand, within GFF418at 453.797 kb on + strandat 453.797 kb on + strandat 453.797 kb on + strandat 453.798 kb on - strandat 453.798 kb on - strandat 453.798 kb on - strandat 453.798 kb on - strandat 453.986 kb on + strand, within GFF419at 454.202 kb on + strand, within GFF419at 454.517 kb on + strand, within GFF419at 454.517 kb on + strand, within GFF419at 454.518 kb on - strand, within GFF419at 454.518 kb on - strand, within GFF419at 454.518 kb on - strand, within GFF419at 454.553 kb on + strand, within GFF419at 454.553 kb on + strand, within GFF419at 454.553 kb on + strand, within GFF419at 454.554 kb on - strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.577 kb on + strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.578 kb on - strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.601 kb on + strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419at 454.602 kb on - strand, within GFF419

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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452,234 + GFF417 0.29 -0.9
452,234 + GFF417 0.29 -0.6
452,234 + GFF417 0.29 -1.3
452,234 + GFF417 0.29 -1.1
452,234 + GFF417 0.29 +0.0
452,234 + GFF417 0.29 -0.2
452,234 + GFF417 0.29 -3.2
452,234 + GFF417 0.29 -0.6
452,235 - GFF417 0.29 +1.7
452,235 - GFF417 0.29 +0.1
452,235 - GFF417 0.29 -2.0
452,235 - GFF417 0.29 +1.2
452,456 + GFF417 0.48 -2.7
452,456 + GFF417 0.48 -2.6
452,456 + GFF417 0.48 -2.3
452,456 + GFF417 0.48 +0.2
452,456 + GFF417 0.48 +0.6
452,456 + GFF417 0.48 +0.3
452,456 + GFF417 0.48 -2.8
452,456 + GFF417 0.48 -1.2
452,457 - GFF417 0.48 +2.6
452,457 - GFF417 0.48 -1.4
452,498 + GFF417 0.51 +1.2
452,498 + GFF417 0.51 -0.6
452,498 + GFF417 0.51 -0.8
452,498 + GFF417 0.51 -2.3
452,499 - GFF417 0.51 +2.6
452,499 - GFF417 0.51 +0.1
452,499 - GFF417 0.51 -1.8
452,499 - GFF417 0.51 -0.3
452,499 - GFF417 0.51 +1.5
452,582 + GFF417 0.58 -0.3
452,582 + GFF417 0.58 -2.6
452,582 + GFF417 0.58 -0.6
452,582 + GFF417 0.58 +1.6
452,583 - GFF417 0.59 -0.8
452,678 + GFF417 0.66 +0.6
452,678 + GFF417 0.66 -1.5
452,679 - GFF417 0.67 -0.7
452,870 + GFF417 0.83 +1.7
452,870 + GFF417 0.83 +1.9
452,871 - GFF417 0.83 +0.2
452,871 - GFF417 0.83 -0.8
452,871 - GFF417 0.83 +0.9
452,888 + GFF417 0.84 -0.8
452,888 + GFF417 0.84 -0.8
452,888 + GFF417 0.84 -3.3
452,888 + GFF417 0.84 -1.7
453,124 + -0.5
453,124 + +0.2
453,125 - -1.3
453,134 + +0.2
453,156 + -2.8
453,156 + +1.5
453,156 + -3.2
453,156 + -0.9
453,156 + -1.6
453,156 + -1.4
453,157 - +0.4
453,157 - -2.3
453,157 - -0.7
453,158 + -2.3
453,158 + -2.1
453,158 + -2.3
453,159 - +2.4
453,159 - +0.7
453,159 - +0.5
453,159 - +0.2
453,159 - +1.0
453,260 + GFF418 0.12 +0.6
453,260 + GFF418 0.12 +0.6
453,260 + GFF418 0.12 -0.4
453,260 + GFF418 0.12 -1.1
453,260 + GFF418 0.12 -0.3
453,261 - GFF418 0.12 +1.9
453,261 - GFF418 0.12 -0.4
453,261 - GFF418 0.12 -2.4
453,377 + GFF418 0.30 -1.5
453,377 + GFF418 0.30 +0.9
453,377 + GFF418 0.30 +0.9
453,377 + GFF418 0.30 -0.5
453,377 + GFF418 0.30 +0.4
453,377 + GFF418 0.30 +0.4
453,377 + GFF418 0.30 -0.9
453,377 + GFF418 0.30 -2.3
453,377 + GFF418 0.30 +0.6
453,377 + GFF418 0.30 -1.7
453,377 + GFF418 0.30 +1.7
453,378 - GFF418 0.30 +3.3
453,407 + GFF418 0.34 -1.4
453,407 + GFF418 0.34 -1.6
453,407 + GFF418 0.34 -1.3
453,407 + GFF418 0.34 +0.7
453,407 + GFF418 0.34 -0.6
453,407 + GFF418 0.34 +1.9
453,407 + GFF418 0.34 -0.4
453,407 + GFF418 0.34 +1.3
453,407 + GFF418 0.34 -3.0
453,407 + GFF418 0.34 +0.2
453,407 + GFF418 0.34 -2.1
453,407 + GFF418 0.34 +0.9
453,407 + GFF418 0.34 -0.1
453,408 - GFF418 0.34 -1.1
453,408 - GFF418 0.34 -1.4
453,408 - GFF418 0.34 +0.2
453,408 - GFF418 0.34 -1.3
453,408 - GFF418 0.34 -2.1
453,408 - GFF418 0.34 -2.1
453,408 - GFF418 0.34 +1.2
453,408 - GFF418 0.34 +0.9
453,408 - GFF418 0.34 +0.4
453,408 - GFF418 0.34 -0.8
453,408 - GFF418 0.34 -0.3
453,408 - GFF418 0.34 -0.6
453,408 - GFF418 0.34 -2.0
453,408 - GFF418 0.34 +0.5
453,408 - GFF418 0.34 -1.6
453,408 - GFF418 0.34 +0.0
453,428 + GFF418 0.38 +2.9
453,429 - GFF418 0.38 -1.1
453,495 + GFF418 0.48 -1.8
453,495 + GFF418 0.48 -1.6
453,496 - GFF418 0.48 +0.9
453,496 - GFF418 0.48 -1.0
453,496 - GFF418 0.48 +0.0
453,695 + GFF418 0.79 -0.8
453,737 + GFF418 0.85 -0.1
453,737 + GFF418 0.85 +0.2
453,737 + GFF418 0.85 -0.4
453,737 + GFF418 0.85 +0.2
453,737 + GFF418 0.85 +1.7
453,737 + GFF418 0.85 +0.1
453,737 + GFF418 0.85 +0.2
453,737 + GFF418 0.85 -1.1
453,737 + GFF418 0.85 +0.2
453,737 + GFF418 0.85 -0.4
453,737 + GFF418 0.85 -1.3
453,737 + GFF418 0.85 -0.3
453,737 + GFF418 0.85 +0.7
453,737 + GFF418 0.85 -1.1
453,737 + GFF418 0.85 +0.6
453,738 - GFF418 0.85 +0.5
453,738 - GFF418 0.85 +0.7
453,738 - GFF418 0.85 -0.6
453,738 - GFF418 0.85 +1.6
453,738 - GFF418 0.85 -1.3
453,738 - GFF418 0.85 -0.4
453,738 - GFF418 0.85 -1.2
453,738 - GFF418 0.85 -1.7
453,738 - GFF418 0.85 -0.3
453,738 - GFF418 0.85 +0.8
453,738 - GFF418 0.85 +0.5
453,738 - GFF418 0.85 -1.8
453,738 - GFF418 0.85 +1.0
453,738 - GFF418 0.85 +1.6
453,797 + +0.9
453,797 + -3.5
453,797 + -1.0
453,798 - -2.2
453,798 - -2.4
453,798 - +1.4
453,798 - +0.6
453,986 + GFF419 0.14 -0.6
454,202 + GFF419 0.40 +0.1
454,517 + GFF419 0.77 +2.8
454,517 + GFF419 0.77 +1.8
454,518 - GFF419 0.77 -2.1
454,518 - GFF419 0.77 +0.7
454,518 - GFF419 0.77 -0.3
454,553 + GFF419 0.81 -1.4
454,553 + GFF419 0.81 -0.7
454,553 + GFF419 0.81 +3.3
454,554 - GFF419 0.81 +0.1
454,577 + GFF419 0.84 +0.0
454,577 + GFF419 0.84 -0.3
454,577 + GFF419 0.84 -2.0
454,577 + GFF419 0.84 +0.5
454,577 + GFF419 0.84 -0.6
454,578 - GFF419 0.84 -0.8
454,578 - GFF419 0.84 +1.5
454,578 - GFF419 0.84 -1.3
454,578 - GFF419 0.84 -1.0
454,601 + GFF419 0.87 -0.2
454,601 + GFF419 0.87 -1.4
454,601 + GFF419 0.87 +0.4
454,601 + GFF419 0.87 +0.2
454,601 + GFF419 0.87 +0.3
454,601 + GFF419 0.87 -1.7
454,601 + GFF419 0.87 -0.4
454,602 - GFF419 0.87 +0.7
454,602 - GFF419 0.87 -1.1
454,602 - GFF419 0.87 -0.5
454,602 - GFF419 0.87 +3.9
454,602 - GFF419 0.87 +1.6
454,602 - GFF419 0.87 -0.5
454,602 - GFF419 0.87 -1.0
454,602 - GFF419 0.87 -0.6
454,602 - GFF419 0.87 -1.4

Or see this region's nucleotide sequence