Strain Fitness in Variovorax sp. SCN45 around GFF4174

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
78,376	+		GFF4173	0.13	-2.4
78,376	+		GFF4173	0.13	-2.6
78,576	-		GFF4173	0.32	-0.5
78,576	-		GFF4173	0.32	+0.4
78,576	-		GFF4173	0.32	-1.8
78,639	-		GFF4173	0.38	-4.0
78,725	+		GFF4173	0.47	-1.2
78,725	+		GFF4173	0.47	-2.4
78,725	+		GFF4173	0.47	+1.7
78,726	-		GFF4173	0.47	-1.3
78,726	-		GFF4173	0.47	-1.0
78,726	-		GFF4173	0.47	-0.1
78,842	+		GFF4173	0.58	+0.5
78,843	-		GFF4173	0.58	+2.1
78,998	+		GFF4173	0.73	-0.0
78,998	+		GFF4173	0.73	-1.9
79,284	+				-2.6
79,284	+				-1.6
79,284	+				-3.7
79,284	+				+0.8
79,284	+				+0.1
79,285	-				+0.2
79,285	-				+1.3
79,286	+				+0.8
79,286	+				+1.1
79,370	+				-0.9
79,371	-				+0.9
79,372	-				-0.9
79,442	+		GFF4174	0.12	+1.2
79,442	+		GFF4174	0.12	-0.3
79,442	+		GFF4174	0.12	+0.5
79,443	-		GFF4174	0.12	+0.2
79,443	-		GFF4174	0.12	-2.5
79,463	+		GFF4174	0.14	-1.3
79,463	+		GFF4174	0.14	+1.7
79,463	+		GFF4174	0.14	-0.2
79,464	-		GFF4174	0.14	-0.7
79,490	+		GFF4174	0.17	-0.2
79,520	+		GFF4174	0.20	+0.9
79,520	+		GFF4174	0.20	+0.1
79,520	+		GFF4174	0.20	-1.6
79,520	+		GFF4174	0.20	-1.4
79,520	+		GFF4174	0.20	-0.9
79,521	-		GFF4174	0.20	-1.3
79,521	-		GFF4174	0.20	-0.9
79,521	-		GFF4174	0.20	-0.9
79,521	-		GFF4174	0.20	-1.3
79,536	-		GFF4174	0.21	-2.1
79,592	+		GFF4174	0.27	-2.4
79,592	+		GFF4174	0.27	+0.0
79,592	+		GFF4174	0.27	-2.7
79,593	-		GFF4174	0.27	-0.7
79,593	-		GFF4174	0.27	+1.3
79,619	+		GFF4174	0.30	-0.9
79,619	+		GFF4174	0.30	-0.2
79,619	+		GFF4174	0.30	+0.1
79,620	-		GFF4174	0.30	-0.9
79,620	-		GFF4174	0.30	-2.5
79,688	+		GFF4174	0.37	+4.1
79,688	+		GFF4174	0.37	+1.4
79,688	+		GFF4174	0.37	+2.1
79,689	-		GFF4174	0.37	-0.4
79,763	+		GFF4174	0.44	-0.2
79,764	-		GFF4174	0.44	-1.6
79,764	-		GFF4174	0.44	+0.5
79,764	-		GFF4174	0.44	-1.1
79,823	+		GFF4174	0.50	+0.5
79,823	+		GFF4174	0.50	+5.5
79,823	+		GFF4174	0.50	-0.6
79,823	+		GFF4174	0.50	-1.6
79,823	+		GFF4174	0.50	-2.4
79,823	+		GFF4174	0.50	+2.6
79,824	-		GFF4174	0.51	+1.6
79,824	-		GFF4174	0.51	-3.1
79,824	-		GFF4174	0.51	-1.4
79,852	+		GFF4174	0.53	+4.3
79,852	+		GFF4174	0.53	+1.4
79,852	+		GFF4174	0.53	+0.2
79,852	+		GFF4174	0.53	+1.7
79,853	-		GFF4174	0.53	+2.1
79,853	-		GFF4174	0.53	+0.7
79,853	-		GFF4174	0.53	-1.1
79,853	-		GFF4174	0.53	-3.1
79,854	-		GFF4174	0.54	-1.2
79,913	+		GFF4174	0.60	-2.1
79,913	+		GFF4174	0.60	+2.0
79,952	+		GFF4174	0.64	-0.2
79,952	+		GFF4174	0.64	-0.1
79,952	+		GFF4174	0.64	-1.4
79,952	+		GFF4174	0.64	-2.0
79,952	+		GFF4174	0.64	-1.9
79,952	+		GFF4174	0.64	-0.2
79,953	-		GFF4174	0.64	+0.5
79,953	-		GFF4174	0.64	-1.1
79,953	-		GFF4174	0.64	-1.5
79,953	-		GFF4174	0.64	+1.7
80,001	+		GFF4174	0.68	+0.1
80,002	-		GFF4174	0.69	-1.3
80,002	-		GFF4174	0.69	+0.1
80,026	+		GFF4174	0.71	-0.5
80,026	+		GFF4174	0.71	-2.7
80,108	+		GFF4174	0.79	-4.6
80,109	-		GFF4174	0.79	-0.9
80,212	+				-0.9
80,212	+				+2.1
80,213	-				+0.1
80,213	-				-0.7
80,258	+				+0.7
80,258	+				-0.2
80,258	+				+0.1
80,338	+				-1.8
80,338	+				+1.1
80,338	+				+0.5
80,339	-				+0.8
80,339	-				-1.5
80,339	-				+0.1
80,339	-				-1.5
80,675	+		GFF4175	0.54	+0.3
80,675	+		GFF4175	0.54	-2.7
80,676	-		GFF4175	0.54	-1.0
80,676	-		GFF4175	0.54	-1.0
80,676	-		GFF4175	0.54	-1.2
80,917	+				+2.3
80,918	-				-1.2
80,918	-				-1.2
80,918	-				-0.5
80,996	+				-0.1
81,230	-		GFF4176	0.21	+0.5