Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4148 and GFF4149 are separated by 91 nucleotides GFF4149 and GFF4150 are separated by 295 nucleotides
GFF4148 - hypothetical protein, at 54,094 to 55,098
GFF4148
GFF4149 - hypothetical protein, at 55,190 to 56,152
GFF4149
GFF4150 - Salicylate hydroxylase (EC 1.14.13.1), at 56,448 to 57,704
GFF4150
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.570 kb on - strand, within GFF4148 at 54.601 kb on - strand, within GFF4148 at 54.834 kb on - strand, within GFF4148 at 54.834 kb on - strand, within GFF4148 at 54.900 kb on - strand, within GFF4148 at 54.942 kb on - strand, within GFF4148 at 54.942 kb on - strand, within GFF4148 at 54.942 kb on - strand, within GFF4148 at 54.950 kb on + strand, within GFF4148 at 54.950 kb on + strand, within GFF4148 at 54.951 kb on - strand, within GFF4148 at 54.951 kb on - strand, within GFF4148 at 54.951 kb on - strand, within GFF4148 at 55.162 kb on + strand at 55.422 kb on + strand, within GFF4149 at 55.423 kb on - strand, within GFF4149 at 55.430 kb on + strand, within GFF4149 at 55.431 kb on - strand, within GFF4149 at 55.431 kb on - strand, within GFF4149 at 56.133 kb on + strand at 56.201 kb on - strand at 56.282 kb on + strand at 56.282 kb on + strand at 56.282 kb on + strand at 56.283 kb on - strand at 56.283 kb on - strand at 56.335 kb on - strand at 56.667 kb on + strand, within GFF4150 at 56.667 kb on + strand, within GFF4150 at 56.668 kb on - strand, within GFF4150 at 56.668 kb on - strand, within GFF4150 at 56.736 kb on + strand, within GFF4150 at 56.736 kb on + strand, within GFF4150 at 56.963 kb on - strand, within GFF4150
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 54,570 - GFF4148 0.47 +0.0 54,601 - GFF4148 0.50 -1.9 54,834 - GFF4148 0.74 -0.4 54,834 - GFF4148 0.74 -0.7 54,900 - GFF4148 0.80 -0.4 54,942 - GFF4148 0.84 +0.8 54,942 - GFF4148 0.84 +1.2 54,942 - GFF4148 0.84 -3.3 54,950 + GFF4148 0.85 +0.9 54,950 + GFF4148 0.85 -0.6 54,951 - GFF4148 0.85 -2.3 54,951 - GFF4148 0.85 -1.8 54,951 - GFF4148 0.85 -1.1 55,162 + -0.4 55,422 + GFF4149 0.24 -2.0 55,423 - GFF4149 0.24 -2.1 55,430 + GFF4149 0.25 -2.2 55,431 - GFF4149 0.25 +0.1 55,431 - GFF4149 0.25 +0.1 56,133 + -0.7 56,201 - -1.1 56,282 + -0.7 56,282 + +0.7 56,282 + -0.9 56,283 - -0.3 56,283 - -0.5 56,335 - +2.1 56,667 + GFF4150 0.17 -3.1 56,667 + GFF4150 0.17 -0.5 56,668 - GFF4150 0.18 -0.6 56,668 - GFF4150 0.18 +0.1 56,736 + GFF4150 0.23 +1.1 56,736 + GFF4150 0.23 -0.9 56,963 - GFF4150 0.41 +0.1
Or see this region's nucleotide sequence