Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4068 and GFF4069 overlap by 4 nucleotides GFF4069 and GFF4070 are separated by 191 nucleotides GFF4070 and GFF4071 are separated by 67 nucleotides GFF4071 and GFF4072 are separated by 116 nucleotides GFF4072 and GFF4073 overlap by 4 nucleotides
GFF4068 - Heavy metal sensor histidine kinase, at 283,048 to 284,445
GFF4068
GFF4069 - DNA-binding heavy metal response regulator, at 284,442 to 285,125
GFF4069
GFF4070 - no description, at 285,317 to 285,712
GFF4070
GFF4071 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 285,780 to 286,205
GFF4071
GFF4072 - hypothetical protein, at 286,322 to 286,693
GFF4072
GFF4073 - Copper tolerance protein, at 286,690 to 288,114
GFF4073
Position (kb) 285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 284.476 kb on + strand at 284.476 kb on + strand at 284.477 kb on - strand at 284.477 kb on - strand at 284.477 kb on - strand at 284.749 kb on + strand, within GFF4069 at 284.749 kb on + strand, within GFF4069 at 284.749 kb on + strand, within GFF4069 at 284.750 kb on - strand, within GFF4069 at 284.750 kb on - strand, within GFF4069 at 284.750 kb on - strand, within GFF4069 at 284.836 kb on + strand, within GFF4069 at 284.837 kb on - strand, within GFF4069 at 285.082 kb on + strand at 285.136 kb on + strand at 285.137 kb on - strand at 285.163 kb on - strand at 285.172 kb on + strand at 285.172 kb on + strand at 285.205 kb on - strand at 285.208 kb on + strand at 285.209 kb on - strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.440 kb on + strand, within GFF4070 at 285.440 kb on + strand, within GFF4070 at 285.441 kb on - strand, within GFF4070 at 285.441 kb on - strand, within GFF4070 at 285.484 kb on - strand, within GFF4070 at 285.553 kb on + strand, within GFF4070 at 285.554 kb on - strand, within GFF4070 at 285.767 kb on + strand at 285.768 kb on - strand at 286.059 kb on - strand, within GFF4071 at 286.203 kb on + strand at 286.204 kb on - strand at 286.293 kb on + strand at 286.469 kb on + strand, within GFF4072 at 286.469 kb on + strand, within GFF4072 at 286.469 kb on + strand, within GFF4072 at 286.490 kb on + strand, within GFF4072 at 286.491 kb on - strand, within GFF4072 at 286.571 kb on + strand, within GFF4072
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 284,476 + -0.8 284,476 + +0.3 284,477 - +0.2 284,477 - +1.2 284,477 - -0.6 284,749 + GFF4069 0.45 -2.2 284,749 + GFF4069 0.45 -1.4 284,749 + GFF4069 0.45 +0.6 284,750 - GFF4069 0.45 -1.7 284,750 - GFF4069 0.45 +2.7 284,750 - GFF4069 0.45 +3.0 284,836 + GFF4069 0.58 +0.4 284,837 - GFF4069 0.58 +0.9 285,082 + -1.1 285,136 + +0.4 285,137 - -0.3 285,163 - -1.7 285,172 + -0.6 285,172 + -2.1 285,205 - -1.5 285,208 + -0.3 285,209 - +1.6 285,313 + +0.9 285,313 + -1.0 285,313 + +0.6 285,313 + -1.1 285,313 + +0.3 285,313 + -0.6 285,313 + +0.7 285,314 - +1.0 285,314 - +0.3 285,314 - +1.0 285,314 - -0.3 285,440 + GFF4070 0.31 -0.4 285,440 + GFF4070 0.31 +2.5 285,441 - GFF4070 0.31 +0.5 285,441 - GFF4070 0.31 +0.7 285,484 - GFF4070 0.42 -0.8 285,553 + GFF4070 0.60 -2.7 285,554 - GFF4070 0.60 -1.0 285,767 + +0.8 285,768 - -0.3 286,059 - GFF4071 0.65 -0.8 286,203 + -0.0 286,204 - -1.4 286,293 + -0.7 286,469 + GFF4072 0.40 +0.9 286,469 + GFF4072 0.40 +4.6 286,469 + GFF4072 0.40 -0.1 286,490 + GFF4072 0.45 -1.0 286,491 - GFF4072 0.45 -3.0 286,571 + GFF4072 0.67 +0.8
Or see this region's nucleotide sequence