Strain Fitness in Variovorax sp. SCN45 around GFF407

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
440,993	+				+0.4
440,993	+				-2.9
440,994	-				-0.8
440,994	-				-2.7
441,011	+				-0.7
441,012	-				-0.6
441,024	+				-1.7
441,024	+				+1.3
441,024	+				+1.4
441,024	-				-1.9
441,025	-				-0.2
441,025	-				-1.6
441,025	-				+0.3
441,025	-				+0.1
441,025	-				-0.2
441,187	-		GFF406	0.23	-0.6
441,426	+		GFF406	0.57	+0.2
441,426	+		GFF406	0.57	+2.0
441,426	+		GFF406	0.57	-1.4
441,427	-		GFF406	0.57	-0.4
441,427	-		GFF406	0.57	+2.3
441,732	+				-1.6
441,732	+				+0.9
441,732	+				+0.2
441,732	+				-0.6
441,732	+				-2.0
441,732	+				-1.8
441,732	+				-1.7
441,732	+				+0.2
441,732	+				-2.0
441,732	+				-2.3
441,732	+				-1.8
441,732	+				-1.6
441,732	+				+0.1
441,732	+				+1.8
441,732	+				-1.0
441,732	+				+0.3
441,732	+				-0.2
441,732	+				-1.0
441,732	+				-1.7
441,733	-				+1.8
441,733	-				+0.3
441,733	-				-0.6
441,733	-				-0.6
441,733	-				-2.6
441,733	-				+0.4
441,733	-				+0.2
441,733	-				+2.0
441,733	-				-1.6
441,733	-				+0.7
441,733	-				-1.0
441,733	-				+1.1
441,733	-				-1.0
441,733	-				-3.0
441,733	-				-0.6
441,733	-				-3.4
441,733	-				+0.4
441,733	-				-0.4
441,733	-				-2.9
441,733	-				-0.4
441,733	-				-3.2
441,733	-				+0.3
441,750	-				-0.7
441,750	-				+1.3
441,750	-				-0.2
441,750	-				+0.0
441,750	-				-1.8
441,952	+		GFF407	0.31	-3.1
441,952	+		GFF407	0.31	-1.6
441,952	+		GFF407	0.31	-1.2
441,953	-		GFF407	0.31	-0.2
441,953	-		GFF407	0.31	+2.6
441,953	-		GFF407	0.31	-0.8
441,953	-		GFF407	0.31	-1.8
441,953	-		GFF407	0.31	-0.6
441,953	-		GFF407	0.31	-1.2
441,953	-		GFF407	0.31	+1.8
442,082	-		GFF407	0.58	-0.5
442,177	+		GFF407	0.78	-0.5
442,178	-		GFF407	0.78	-1.6
442,178	-		GFF407	0.78	+1.4
442,248	+				+1.2
442,253	+				+0.2
442,253	+				-1.2
442,254	-				-2.4
442,254	-				-0.2
442,266	+				-2.9
442,266	+				+0.6
442,266	+				-0.5
442,267	-				-1.4
442,270	+				+0.1
442,270	+				-3.2
442,270	+				-0.8
442,270	+				-0.0
442,270	+				-1.5
442,270	+				-0.8
442,270	+				+1.3
442,270	+				-0.7
442,270	+				-0.4
442,270	+				+1.0
442,271	-				-2.2
442,271	-				-1.0
442,271	-				+0.2
442,271	-				-0.6
442,271	-				-2.8
442,271	-				-2.1
442,271	-				-0.6
442,271	-				-3.9
442,271	-				-1.0
442,316	+				-0.2
442,332	+				-0.8
442,333	-				-0.2
442,416	-		GFF408	0.11	-0.2
442,652	+		GFF408	0.43	+0.2
442,653	-		GFF408	0.43	-1.0
442,653	-		GFF408	0.43	-1.8
443,012	+				-1.0
443,012	+				-1.8
443,012	+				+0.2
443,013	-				-1.0
443,013	-				+1.8
443,013	-				+0.2
443,039	+				+1.8
443,039	+				+0.8
443,040	-				+0.2
443,040	-				-1.0