Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4042 and GFF4043 overlap by 4 nucleotides GFF4043 and GFF4044 are separated by 807 nucleotides
GFF4042 - Copper-sensing two-component system response regulator CusR, at 253,094 to 253,777
GFF4042
GFF4043 - Copper sensory histidine kinase CusS, at 253,774 to 255,102
GFF4043
GFF4044 - hypothetical protein, at 255,910 to 256,335
GFF4044
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 252.981 kb on - strand at 252.981 kb on - strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.991 kb on - strand at 253.057 kb on + strand at 253.057 kb on + strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.226 kb on + strand, within GFF4042 at 253.227 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042 at 253.747 kb on - strand at 253.747 kb on - strand at 253.915 kb on + strand, within GFF4043 at 253.918 kb on - strand, within GFF4043 at 254.054 kb on - strand, within GFF4043 at 254.054 kb on - strand, within GFF4043 at 255.012 kb on + strand at 255.013 kb on - strand at 255.013 kb on - strand at 255.013 kb on - strand at 255.117 kb on - strand at 255.117 kb on - strand at 255.117 kb on - strand at 255.258 kb on + strand at 255.510 kb on + strand at 255.510 kb on + strand at 255.511 kb on - strand at 255.544 kb on - strand at 255.636 kb on - strand at 255.722 kb on + strand at 255.723 kb on - strand at 255.727 kb on - strand at 255.747 kb on - strand at 255.747 kb on - strand at 255.846 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 252,981 - -3.6 252,981 - +1.0 252,990 + +3.4 252,990 + -0.8 252,990 + +0.7 252,990 + -0.7 252,991 - +2.0 253,057 + +0.4 253,057 + +0.0 253,137 - -1.3 253,137 - -0.2 253,226 + GFF4042 0.19 -0.0 253,227 - GFF4042 0.19 +0.7 253,383 - GFF4042 0.42 +0.7 253,383 - GFF4042 0.42 +1.3 253,747 - -4.1 253,747 - -1.1 253,915 + GFF4043 0.11 +1.1 253,918 - GFF4043 0.11 +1.0 254,054 - GFF4043 0.21 +2.6 254,054 - GFF4043 0.21 -1.2 255,012 + -0.3 255,013 - -2.7 255,013 - -2.5 255,013 - -2.4 255,117 - -2.9 255,117 - -2.1 255,117 - -1.9 255,258 + -0.7 255,510 + +3.0 255,510 + -1.1 255,511 - -2.4 255,544 - -0.2 255,636 - -2.1 255,722 + -1.0 255,723 - +0.2 255,727 - +3.3 255,747 - +0.2 255,747 - +1.0 255,846 + -2.3
Or see this region's nucleotide sequence