Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4021 and GFF4022 are separated by 138 nucleotides GFF4022 and GFF4023 are separated by 264 nucleotides
GFF4021 - Uncharacterized MFS-type transporter, at 229,127 to 230,326
GFF4021
GFF4022 - UPF0060 membrane protein YnfA, at 230,465 to 230,800
GFF4022
GFF4023 - no description, at 231,065 to 231,217
GFF4023
Position (kb) 230
231 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 229.466 kb on + strand, within GFF4021 at 229.466 kb on + strand, within GFF4021 at 229.466 kb on + strand, within GFF4021 at 229.466 kb on + strand, within GFF4021 at 229.466 kb on + strand, within GFF4021 at 229.467 kb on - strand, within GFF4021 at 229.467 kb on - strand, within GFF4021 at 229.491 kb on + strand, within GFF4021 at 229.491 kb on + strand, within GFF4021 at 229.491 kb on + strand, within GFF4021 at 229.492 kb on - strand, within GFF4021 at 229.785 kb on - strand, within GFF4021 at 229.785 kb on - strand, within GFF4021 at 229.785 kb on - strand, within GFF4021 at 229.785 kb on - strand, within GFF4021 at 229.928 kb on + strand, within GFF4021 at 230.197 kb on + strand, within GFF4021 at 230.528 kb on + strand, within GFF4022 at 230.595 kb on + strand, within GFF4022 at 230.596 kb on - strand, within GFF4022 at 230.596 kb on - strand, within GFF4022 at 230.596 kb on - strand, within GFF4022 at 230.596 kb on - strand, within GFF4022 at 230.608 kb on - strand, within GFF4022 at 230.616 kb on + strand, within GFF4022 at 230.616 kb on + strand, within GFF4022 at 230.616 kb on + strand, within GFF4022 at 230.617 kb on - strand, within GFF4022 at 230.617 kb on - strand, within GFF4022 at 230.642 kb on + strand, within GFF4022 at 230.727 kb on + strand, within GFF4022 at 230.727 kb on + strand, within GFF4022 at 230.728 kb on - strand, within GFF4022 at 230.728 kb on - strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.732 kb on + strand, within GFF4022 at 230.733 kb on - strand, within GFF4022 at 230.737 kb on - strand, within GFF4022 at 230.737 kb on - strand, within GFF4022 at 230.737 kb on - strand, within GFF4022 at 230.737 kb on - strand, within GFF4022 at 230.885 kb on + strand at 230.897 kb on + strand at 230.897 kb on + strand at 230.898 kb on - strand at 230.898 kb on - strand at 230.898 kb on - strand at 230.898 kb on - strand at 230.898 kb on - strand at 230.898 kb on - strand at 230.942 kb on + strand at 230.942 kb on + strand at 230.943 kb on - strand at 230.943 kb on - strand at 230.943 kb on - strand at 230.943 kb on - strand at 230.943 kb on - strand at 230.943 kb on - strand at 230.968 kb on + strand at 230.968 kb on + strand at 231.066 kb on + strand at 231.066 kb on + strand at 231.067 kb on - strand at 231.088 kb on + strand, within GFF4023 at 231.089 kb on - strand, within GFF4023 at 231.089 kb on - strand, within GFF4023 at 231.303 kb on - strand at 231.303 kb on - strand at 231.303 kb on - strand at 231.358 kb on + strand at 231.359 kb on - strand at 231.359 kb on - strand at 231.359 kb on - strand at 231.367 kb on + strand at 231.434 kb on + strand at 231.448 kb on - strand at 231.468 kb on + strand at 231.469 kb on - strand at 231.596 kb on + strand at 231.596 kb on + strand at 231.596 kb on + strand at 231.596 kb on + strand at 231.596 kb on + strand at 231.596 kb on + strand at 231.597 kb on - strand at 231.597 kb on - strand at 231.681 kb on - strand at 231.684 kb on - strand at 231.738 kb on + strand at 231.738 kb on + strand at 231.739 kb on - strand at 231.739 kb on - strand at 231.739 kb on - strand at 231.739 kb on - strand at 231.740 kb on + strand at 231.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 229,466 + GFF4021 0.28 -0.5 229,466 + GFF4021 0.28 +2.0 229,466 + GFF4021 0.28 +2.0 229,466 + GFF4021 0.28 +0.3 229,466 + GFF4021 0.28 +0.4 229,467 - GFF4021 0.28 -0.8 229,467 - GFF4021 0.28 -2.0 229,491 + GFF4021 0.30 -0.7 229,491 + GFF4021 0.30 +0.4 229,491 + GFF4021 0.30 -1.7 229,492 - GFF4021 0.30 +1.3 229,785 - GFF4021 0.55 +0.1 229,785 - GFF4021 0.55 -1.3 229,785 - GFF4021 0.55 +0.0 229,785 - GFF4021 0.55 +0.6 229,928 + GFF4021 0.67 +1.0 230,197 + GFF4021 0.89 +0.4 230,528 + GFF4022 0.19 +1.0 230,595 + GFF4022 0.39 -0.2 230,596 - GFF4022 0.39 -1.1 230,596 - GFF4022 0.39 +1.2 230,596 - GFF4022 0.39 -1.6 230,596 - GFF4022 0.39 +0.7 230,608 - GFF4022 0.43 +0.4 230,616 + GFF4022 0.45 -1.0 230,616 + GFF4022 0.45 -1.6 230,616 + GFF4022 0.45 +1.0 230,617 - GFF4022 0.45 -1.2 230,617 - GFF4022 0.45 -0.1 230,642 + GFF4022 0.53 +1.6 230,727 + GFF4022 0.78 +1.5 230,727 + GFF4022 0.78 -1.7 230,728 - GFF4022 0.78 -0.3 230,728 - GFF4022 0.78 -0.3 230,732 + GFF4022 0.79 +0.6 230,732 + GFF4022 0.79 -2.4 230,732 + GFF4022 0.79 -2.4 230,732 + GFF4022 0.79 -2.6 230,732 + GFF4022 0.79 -1.9 230,732 + GFF4022 0.79 +2.0 230,732 + GFF4022 0.79 -2.0 230,732 + GFF4022 0.79 +2.5 230,733 - GFF4022 0.80 -1.6 230,737 - GFF4022 0.81 +0.2 230,737 - GFF4022 0.81 -0.3 230,737 - GFF4022 0.81 +0.6 230,737 - GFF4022 0.81 +1.3 230,885 + +0.9 230,897 + +0.4 230,897 + -1.8 230,898 - +0.9 230,898 - -0.6 230,898 - -0.8 230,898 - -0.2 230,898 - +0.5 230,898 - -1.3 230,942 + -2.2 230,942 + -0.1 230,943 - -1.8 230,943 - -0.4 230,943 - +1.1 230,943 - -1.7 230,943 - -2.2 230,943 - -0.3 230,968 + -1.9 230,968 + +0.4 231,066 + -0.2 231,066 + -0.2 231,067 - +0.0 231,088 + GFF4023 0.15 +0.7 231,089 - GFF4023 0.16 -1.7 231,089 - GFF4023 0.16 +0.2 231,303 - +0.0 231,303 - -1.1 231,303 - -1.9 231,358 + -0.1 231,359 - +1.1 231,359 - -1.1 231,359 - +0.2 231,367 + +0.6 231,434 + +3.3 231,448 - -0.8 231,468 + +0.5 231,469 - +1.3 231,596 + -1.0 231,596 + -1.6 231,596 + +1.4 231,596 + +0.5 231,596 + -0.3 231,596 + -0.3 231,597 - -0.3 231,597 - -0.2 231,681 - +0.4 231,684 - -2.6 231,738 + +2.8 231,738 + +0.4 231,739 - -0.3 231,739 - -1.1 231,739 - -2.3 231,739 - -1.1 231,740 + -0.0 231,741 - -0.3
Or see this region's nucleotide sequence