Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4002 and GFF4003 are separated by 28 nucleotides GFF4003 and GFF4004 are separated by 9 nucleotides
GFF4002 - Putative transmembrane protein, at 207,076 to 208,608
GFF4002
GFF4003 - FIGfam005179, at 208,637 to 209,467
GFF4003
GFF4004 - Homoserine kinase (EC 2.7.1.39), at 209,477 to 210,541
GFF4004
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 207.853 kb on + strand, within GFF4002 at 207.854 kb on - strand, within GFF4002 at 207.854 kb on - strand, within GFF4002 at 207.862 kb on + strand, within GFF4002 at 207.862 kb on + strand, within GFF4002 at 207.863 kb on - strand, within GFF4002 at 207.863 kb on - strand, within GFF4002 at 207.908 kb on + strand, within GFF4002 at 207.908 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.016 kb on - strand, within GFF4002 at 208.016 kb on - strand, within GFF4002 at 208.096 kb on + strand, within GFF4002 at 208.097 kb on - strand, within GFF4002 at 208.376 kb on - strand, within GFF4002 at 208.376 kb on - strand, within GFF4002 at 208.854 kb on + strand, within GFF4003 at 208.854 kb on + strand, within GFF4003 at 209.052 kb on + strand, within GFF4003 at 209.052 kb on + strand, within GFF4003 at 209.052 kb on + strand, within GFF4003 at 209.053 kb on - strand, within GFF4003 at 209.053 kb on - strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.250 kb on + strand, within GFF4003 at 209.250 kb on + strand, within GFF4003 at 209.294 kb on + strand, within GFF4003
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 207,853 + GFF4002 0.51 -2.7 207,854 - GFF4002 0.51 +0.6 207,854 - GFF4002 0.51 +0.2 207,862 + GFF4002 0.51 -3.0 207,862 + GFF4002 0.51 -1.0 207,863 - GFF4002 0.51 -2.3 207,863 - GFF4002 0.51 -3.4 207,908 + GFF4002 0.54 -1.1 207,908 + GFF4002 0.54 -1.1 208,015 + GFF4002 0.61 +0.7 208,015 + GFF4002 0.61 -2.3 208,015 + GFF4002 0.61 +0.5 208,015 + GFF4002 0.61 +2.0 208,016 - GFF4002 0.61 -1.3 208,016 - GFF4002 0.61 +1.4 208,096 + GFF4002 0.67 +0.2 208,097 - GFF4002 0.67 +0.1 208,376 - GFF4002 0.85 +2.4 208,376 - GFF4002 0.85 -3.3 208,854 + GFF4003 0.26 +1.0 208,854 + GFF4003 0.26 -0.3 209,052 + GFF4003 0.50 +0.4 209,052 + GFF4003 0.50 -2.7 209,052 + GFF4003 0.50 +1.0 209,053 - GFF4003 0.50 +0.4 209,053 - GFF4003 0.50 +1.4 209,112 + GFF4003 0.57 -1.1 209,112 + GFF4003 0.57 +0.0 209,112 + GFF4003 0.57 -1.1 209,112 + GFF4003 0.57 -3.5 209,113 - GFF4003 0.57 -1.1 209,113 - GFF4003 0.57 +1.0 209,113 - GFF4003 0.57 -1.0 209,113 - GFF4003 0.57 +2.7 209,113 - GFF4003 0.57 -0.1 209,113 - GFF4003 0.57 -0.2 209,113 - GFF4003 0.57 -0.3 209,113 - GFF4003 0.57 +0.4 209,113 - GFF4003 0.57 +0.4 209,250 + GFF4003 0.74 +0.2 209,250 + GFF4003 0.74 +0.8 209,294 + GFF4003 0.79 -1.3
Or see this region's nucleotide sequence