Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3979 and GFF3980 overlap by 4 nucleotides GFF3980 and GFF3981 are separated by 43 nucleotides
GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847
GFF3979
GFF3980 - 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-), at 183,844 to 184,308
GFF3980
GFF3981 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 184,352 to 185,515
GFF3981
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.858 kb on + strand, within GFF3979 at 183.026 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.140 kb on + strand, within GFF3979 at 183.141 kb on - strand, within GFF3979 at 183.264 kb on + strand, within GFF3979 at 183.265 kb on - strand, within GFF3979 at 183.369 kb on - strand, within GFF3979 at 183.386 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.435 kb on + strand, within GFF3979 at 183.583 kb on - strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.714 kb on + strand, within GFF3979 at 183.941 kb on - strand, within GFF3980 at 184.156 kb on + strand, within GFF3980 at 184.347 kb on - strand at 184.526 kb on + strand, within GFF3981 at 184.527 kb on - strand, within GFF3981 at 184.844 kb on + strand, within GFF3981 at 184.844 kb on + strand, within GFF3981 at 184.880 kb on + strand, within GFF3981 at 184.881 kb on - strand, within GFF3981 at 185.070 kb on - strand, within GFF3981 at 185.085 kb on - strand, within GFF3981 at 185.198 kb on + strand, within GFF3981 at 185.198 kb on + strand, within GFF3981 at 185.198 kb on + strand, within GFF3981
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 182,858 + GFF3979 0.25 +0.6 183,026 + GFF3979 0.38 -0.3 183,140 + GFF3979 0.47 -0.7 183,140 + GFF3979 0.47 +0.5 183,141 - GFF3979 0.47 -0.8 183,264 + GFF3979 0.56 -0.3 183,265 - GFF3979 0.56 -0.3 183,369 - GFF3979 0.64 -2.1 183,386 + GFF3979 0.65 -0.2 183,435 + GFF3979 0.69 -1.4 183,435 + GFF3979 0.69 -0.7 183,583 - GFF3979 0.80 +0.5 183,714 + GFF3979 0.90 -2.9 183,714 + GFF3979 0.90 +0.3 183,941 - GFF3980 0.21 +1.6 184,156 + GFF3980 0.67 -0.1 184,347 - +0.1 184,526 + GFF3981 0.15 +2.0 184,527 - GFF3981 0.15 +0.8 184,844 + GFF3981 0.42 +1.0 184,844 + GFF3981 0.42 -0.6 184,880 + GFF3981 0.45 -2.4 184,881 - GFF3981 0.45 -0.5 185,070 - GFF3981 0.62 -1.6 185,085 - GFF3981 0.63 -0.5 185,198 + GFF3981 0.73 -0.6 185,198 + GFF3981 0.73 +0.7 185,198 + GFF3981 0.73 +0.5
Or see this region's nucleotide sequence