Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3967 and GFF3968 are separated by 4 nucleotides GFF3968 and GFF3969 are separated by 13 nucleotides
GFF3967 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 167,972 to 170,164
GFF3967
GFF3968 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 170,169 to 171,674
GFF3968
GFF3969 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 171,688 to 172,680
GFF3969
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.553 kb on + strand, within GFF3967 at 169.553 kb on + strand, within GFF3967 at 169.553 kb on + strand, within GFF3967 at 169.554 kb on - strand, within GFF3967 at 169.554 kb on - strand, within GFF3967 at 169.554 kb on - strand, within GFF3967 at 169.686 kb on - strand, within GFF3967 at 169.686 kb on - strand, within GFF3967 at 169.686 kb on - strand, within GFF3967 at 170.042 kb on + strand at 170.043 kb on - strand at 170.154 kb on - strand at 170.331 kb on + strand, within GFF3968 at 170.331 kb on + strand, within GFF3968 at 170.331 kb on + strand, within GFF3968 at 170.332 kb on - strand, within GFF3968 at 170.332 kb on - strand, within GFF3968 at 170.332 kb on - strand, within GFF3968 at 170.973 kb on + strand, within GFF3968 at 170.985 kb on + strand, within GFF3968 at 171.186 kb on + strand, within GFF3968 at 171.186 kb on + strand, within GFF3968 at 171.186 kb on + strand, within GFF3968 at 171.187 kb on - strand, within GFF3968 at 171.187 kb on - strand, within GFF3968 at 171.331 kb on - strand, within GFF3968 at 171.387 kb on + strand, within GFF3968 at 171.387 kb on + strand, within GFF3968 at 171.388 kb on - strand, within GFF3968 at 171.388 kb on - strand, within GFF3968 at 171.502 kb on - strand, within GFF3968 at 171.534 kb on + strand at 171.534 kb on + strand at 171.534 kb on + strand at 171.534 kb on + strand at 171.919 kb on + strand, within GFF3969 at 171.919 kb on + strand, within GFF3969 at 172.294 kb on + strand, within GFF3969 at 172.634 kb on + strand at 172.634 kb on + strand at 172.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 169,553 + GFF3967 0.72 +0.4 169,553 + GFF3967 0.72 -1.1 169,553 + GFF3967 0.72 -1.9 169,554 - GFF3967 0.72 +1.3 169,554 - GFF3967 0.72 +1.0 169,554 - GFF3967 0.72 +1.7 169,686 - GFF3967 0.78 -0.8 169,686 - GFF3967 0.78 -1.1 169,686 - GFF3967 0.78 +2.0 170,042 + -2.1 170,043 - -1.1 170,154 - +2.2 170,331 + GFF3968 0.11 -0.2 170,331 + GFF3968 0.11 -3.0 170,331 + GFF3968 0.11 -0.3 170,332 - GFF3968 0.11 -2.9 170,332 - GFF3968 0.11 +0.7 170,332 - GFF3968 0.11 -2.1 170,973 + GFF3968 0.53 +0.4 170,985 + GFF3968 0.54 -1.1 171,186 + GFF3968 0.68 +0.2 171,186 + GFF3968 0.68 -1.1 171,186 + GFF3968 0.68 -0.2 171,187 - GFF3968 0.68 +0.3 171,187 - GFF3968 0.68 -2.3 171,331 - GFF3968 0.77 +1.0 171,387 + GFF3968 0.81 -1.8 171,387 + GFF3968 0.81 -3.4 171,388 - GFF3968 0.81 +0.4 171,388 - GFF3968 0.81 -0.3 171,502 - GFF3968 0.89 -0.3 171,534 + +0.7 171,534 + -0.8 171,534 + +0.5 171,534 + +1.9 171,919 + GFF3969 0.23 -0.3 171,919 + GFF3969 0.23 -2.7 172,294 + GFF3969 0.61 +0.7 172,634 + -1.1 172,634 + -1.9 172,635 - -0.2
Or see this region's nucleotide sequence