Strain Fitness in Variovorax sp. SCN45 around GFF3931

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3930 and GFF3931 are separated by 77 nucleotidesGFF3931 and GFF3932 are separated by 1 nucleotidesGFF3932 and GFF3933 are separated by 142 nucleotides GFF3930 - Peptidoglycan lipid II flippase MurJ, at 134,166 to 135,833 GFF3930 GFF3931 - Protein sirB1, at 135,911 to 136,762 GFF3931 GFF3932 - Acetyltransferase, GNAT family, at 136,764 to 137,192 GFF3932 GFF3933 - PhnB protein, at 137,335 to 137,766 GFF3933 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 135.900 kb on + strandat 135.900 kb on + strandat 135.900 kb on + strandat 135.901 kb on - strandat 135.901 kb on - strandat 135.912 kb on - strandat 135.935 kb on - strandat 135.935 kb on - strandat 135.947 kb on + strandat 135.947 kb on + strandat 135.948 kb on - strandat 135.948 kb on - strandat 136.022 kb on + strand, within GFF3931at 136.022 kb on + strand, within GFF3931at 136.022 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.181 kb on + strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.182 kb on - strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.184 kb on + strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.185 kb on - strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.202 kb on + strand, within GFF3931at 136.203 kb on - strand, within GFF3931at 136.203 kb on - strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.418 kb on + strand, within GFF3931at 136.419 kb on - strand, within GFF3931at 136.419 kb on - strand, within GFF3931at 136.419 kb on - strand, within GFF3931at 136.469 kb on + strand, within GFF3931at 136.469 kb on + strand, within GFF3931at 136.469 kb on + strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.470 kb on - strand, within GFF3931at 136.523 kb on - strand, within GFF3931at 136.682 kb on + strandat 136.682 kb on + strandat 136.682 kb on + strandat 136.683 kb on - strandat 136.683 kb on - strandat 136.683 kb on - strandat 136.683 kb on - strandat 136.929 kb on + strand, within GFF3932at 136.929 kb on + strand, within GFF3932at 136.929 kb on + strand, within GFF3932at 136.929 kb on + strand, within GFF3932at 136.930 kb on - strand, within GFF3932at 136.930 kb on - strand, within GFF3932at 136.930 kb on - strand, within GFF3932at 136.960 kb on - strand, within GFF3932at 136.960 kb on - strand, within GFF3932at 136.960 kb on - strand, within GFF3932at 136.974 kb on + strand, within GFF3932at 136.975 kb on - strand, within GFF3932at 136.975 kb on - strand, within GFF3932at 137.073 kb on + strand, within GFF3932at 137.073 kb on + strand, within GFF3932at 137.074 kb on - strand, within GFF3932at 137.074 kb on - strand, within GFF3932at 137.181 kb on + strandat 137.181 kb on + strandat 137.182 kb on - strandat 137.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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135,900 + +0.2
135,900 + -3.0
135,900 + +0.1
135,901 - -0.6
135,901 - +0.4
135,912 - -1.7
135,935 - +1.6
135,935 - -2.1
135,947 + -1.5
135,947 + -1.5
135,948 - +1.7
135,948 - +0.9
136,022 + GFF3931 0.13 -3.2
136,022 + GFF3931 0.13 -0.5
136,022 + GFF3931 0.13 -0.8
136,181 + GFF3931 0.32 -0.6
136,181 + GFF3931 0.32 -1.2
136,181 + GFF3931 0.32 -0.8
136,181 + GFF3931 0.32 +1.6
136,181 + GFF3931 0.32 +0.3
136,181 + GFF3931 0.32 +1.8
136,181 + GFF3931 0.32 +0.5
136,182 - GFF3931 0.32 +1.0
136,182 - GFF3931 0.32 -0.3
136,182 - GFF3931 0.32 +0.9
136,182 - GFF3931 0.32 +0.3
136,182 - GFF3931 0.32 -1.0
136,182 - GFF3931 0.32 -0.8
136,182 - GFF3931 0.32 -1.4
136,184 + GFF3931 0.32 +0.0
136,184 + GFF3931 0.32 +0.8
136,184 + GFF3931 0.32 -2.1
136,184 + GFF3931 0.32 -1.1
136,184 + GFF3931 0.32 +0.7
136,184 + GFF3931 0.32 -1.0
136,184 + GFF3931 0.32 -3.0
136,184 + GFF3931 0.32 +0.0
136,184 + GFF3931 0.32 +1.0
136,184 + GFF3931 0.32 -0.8
136,184 + GFF3931 0.32 -1.3
136,184 + GFF3931 0.32 +0.4
136,184 + GFF3931 0.32 +1.0
136,185 - GFF3931 0.32 +0.1
136,185 - GFF3931 0.32 -1.7
136,185 - GFF3931 0.32 -0.2
136,185 - GFF3931 0.32 -0.8
136,185 - GFF3931 0.32 -0.2
136,185 - GFF3931 0.32 -1.3
136,185 - GFF3931 0.32 +0.2
136,185 - GFF3931 0.32 +0.4
136,185 - GFF3931 0.32 +0.6
136,185 - GFF3931 0.32 -0.2
136,185 - GFF3931 0.32 -2.5
136,185 - GFF3931 0.32 +1.2
136,185 - GFF3931 0.32 +0.4
136,185 - GFF3931 0.32 -0.7
136,185 - GFF3931 0.32 -0.3
136,185 - GFF3931 0.32 -1.6
136,185 - GFF3931 0.32 +0.3
136,202 + GFF3931 0.34 +0.2
136,202 + GFF3931 0.34 +0.0
136,202 + GFF3931 0.34 +0.0
136,202 + GFF3931 0.34 +1.5
136,202 + GFF3931 0.34 -0.3
136,203 - GFF3931 0.34 +2.4
136,203 - GFF3931 0.34 -0.3
136,418 + GFF3931 0.60 +1.0
136,418 + GFF3931 0.60 +0.9
136,418 + GFF3931 0.60 -0.3
136,418 + GFF3931 0.60 -0.6
136,419 - GFF3931 0.60 -0.9
136,419 - GFF3931 0.60 -0.6
136,419 - GFF3931 0.60 +0.7
136,469 + GFF3931 0.65 +1.0
136,469 + GFF3931 0.65 -1.1
136,469 + GFF3931 0.65 +2.3
136,470 - GFF3931 0.66 +0.8
136,470 - GFF3931 0.66 +0.4
136,470 - GFF3931 0.66 +0.0
136,470 - GFF3931 0.66 +0.0
136,523 - GFF3931 0.72 +0.1
136,682 + +3.0
136,682 + +0.7
136,682 + -1.6
136,683 - -2.1
136,683 - +1.3
136,683 - -0.6
136,683 - -1.2
136,929 + GFF3932 0.38 -1.6
136,929 + GFF3932 0.38 -1.1
136,929 + GFF3932 0.38 +0.6
136,929 + GFF3932 0.38 -0.6
136,930 - GFF3932 0.39 -0.1
136,930 - GFF3932 0.39 -1.8
136,930 - GFF3932 0.39 -1.4
136,960 - GFF3932 0.46 -1.1
136,960 - GFF3932 0.46 -0.6
136,960 - GFF3932 0.46 +1.2
136,974 + GFF3932 0.49 +1.2
136,975 - GFF3932 0.49 +2.8
136,975 - GFF3932 0.49 +1.8
137,073 + GFF3932 0.72 -0.4
137,073 + GFF3932 0.72 +0.7
137,074 - GFF3932 0.72 -0.6
137,074 - GFF3932 0.72 +1.5
137,181 + +2.4
137,181 + -1.5
137,182 - +1.0
137,224 + -1.7

Or see this region's nucleotide sequence