Strain Fitness in Variovorax sp. SCN45 around GFF3908

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
111,784	+				-0.8
111,785	-				-2.4
111,904	+				+1.3
111,904	+				-2.1
111,904	+				+0.8
111,904	+				-1.6
111,904	+				+0.5
111,904	+				-2.6
111,904	+				-1.9
111,904	+				+0.8
111,904	+				+0.4
111,904	+				+0.4
111,905	-				-2.2
111,905	-				-1.9
111,905	-				-0.1
111,905	-				-1.3
111,905	-				-2.1
111,905	-				+1.8
111,905	-				+0.9
111,905	-				-2.3
111,905	-				+0.1
112,145	-				+2.7
112,155	+				-1.3
112,156	-				+1.4
112,158	+				-0.4
112,158	+				+0.8
112,159	-				-2.1
112,159	-				-1.6
112,159	-				+2.0
112,159	-				-0.9
112,159	-				-0.3
112,159	-				-0.6
112,341	+		GFF3908	0.40	+0.4
112,341	+		GFF3908	0.40	+1.1
112,342	-		GFF3908	0.40	-2.5
112,640	+				-1.1
112,640	+				+0.1
112,641	-				-0.6
112,641	-				-0.7
112,704	+				-1.8
112,704	+				-0.9
112,705	-				+0.7
112,705	-				+0.0
112,780	+				-1.4
112,780	+				+1.4
112,780	+				-1.7
112,780	+				-0.2
112,780	+				-0.3
112,780	+				-1.0
112,780	+				-1.9
112,780	+				-1.0
112,781	-				-0.3
112,781	-				-1.4
112,781	-				-2.6
112,781	-				-0.7
112,781	-				+2.1
112,781	-				+0.7
112,781	-				-1.4
113,119	+		GFF3909	0.14	-0.6
113,119	+		GFF3909	0.14	-1.4
113,120	-		GFF3909	0.14	+0.0
113,120	-		GFF3909	0.14	-1.1
113,120	-		GFF3909	0.14	-3.5
113,120	-		GFF3909	0.14	-3.1
113,122	+		GFF3909	0.15	-2.1
113,123	-		GFF3909	0.15	+2.1
113,123	-		GFF3909	0.15	-3.9
113,123	-		GFF3909	0.15	-0.6
113,123	-		GFF3909	0.15	+2.0
113,165	+		GFF3909	0.16	+0.1
113,185	+		GFF3909	0.17	-0.1
113,220	+		GFF3909	0.18	-0.7
113,221	-		GFF3909	0.18	-0.6
113,275	+		GFF3909	0.20	+0.4
113,276	-		GFF3909	0.20	-2.3
113,276	-		GFF3909	0.20	-2.2
113,276	-		GFF3909	0.20	-2.3
113,276	-		GFF3909	0.20	-1.9
113,305	+		GFF3909	0.21	+1.4
113,306	-		GFF3909	0.21	-2.1
113,329	+		GFF3909	0.22	+0.4
113,329	+		GFF3909	0.22	-2.5
113,329	+		GFF3909	0.22	-1.3
113,329	+		GFF3909	0.22	-2.1
113,329	+		GFF3909	0.22	-1.1
113,329	+		GFF3909	0.22	-1.0
113,329	+		GFF3909	0.22	-1.9
113,329	+		GFF3909	0.22	-2.3
113,329	+		GFF3909	0.22	-1.6
113,329	+		GFF3909	0.22	+0.0
113,329	+		GFF3909	0.22	-0.1
113,329	+		GFF3909	0.22	+1.5
113,329	+		GFF3909	0.22	-1.8
113,329	+		GFF3909	0.22	+0.1
113,330	-		GFF3909	0.22	-0.8
113,330	-		GFF3909	0.22	+0.1
113,330	-		GFF3909	0.22	-0.3
113,330	-		GFF3909	0.22	+0.3
113,330	-		GFF3909	0.22	-2.8
113,330	-		GFF3909	0.22	+0.6
113,330	-		GFF3909	0.22	-2.0
113,330	-		GFF3909	0.22	+0.7
113,330	-		GFF3909	0.22	-2.5
113,330	-		GFF3909	0.22	-0.9
113,332	+		GFF3909	0.22	-1.3
113,449	+		GFF3909	0.26	-1.1
113,449	+		GFF3909	0.26	-1.8
113,449	+		GFF3909	0.26	-0.6
113,449	+		GFF3909	0.26	-0.6
113,449	+		GFF3909	0.26	+0.6
113,450	-		GFF3909	0.26	-1.1
113,450	-		GFF3909	0.26	-0.8
113,450	-		GFF3909	0.26	-2.5
113,450	-		GFF3909	0.26	+0.5
113,450	-		GFF3909	0.26	-0.4
113,450	-		GFF3909	0.26	+0.5
113,450	-		GFF3909	0.26	+0.6
113,450	-		GFF3909	0.26	-0.4
113,530	+		GFF3909	0.29	+0.1
113,530	+		GFF3909	0.29	-0.2
113,530	+		GFF3909	0.29	-0.3
113,530	+		GFF3909	0.29	-2.1
113,530	+		GFF3909	0.29	-0.1
113,530	+		GFF3909	0.29	-0.6
113,530	+		GFF3909	0.29	+0.0
113,530	+		GFF3909	0.29	-2.6
113,531	-		GFF3909	0.29	-2.4
113,531	-		GFF3909	0.29	-1.9
113,531	-		GFF3909	0.29	-1.7
113,531	-		GFF3909	0.29	+0.2
113,531	-		GFF3909	0.29	-2.1
113,531	-		GFF3909	0.29	-0.9
113,531	-		GFF3909	0.29	-2.0
113,531	-		GFF3909	0.29	-0.9