Strain Fitness in Variovorax sp. SCN45 around GFF3893

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3891 and GFF3892 overlap by 4 nucleotidesGFF3892 and GFF3893 are separated by 106 nucleotidesGFF3893 and GFF3894 are separated by 79 nucleotides GFF3891 - Transcriptional regulator, LysR family, at 90,302 to 91,246 GFF3891 GFF3892 - no description, at 91,243 to 91,359 GFF3892 GFF3893 - hypothetical protein, at 91,466 to 96,505 GFF3893 GFF3894 - Citrate synthase (si) (EC 2.3.3.1), at 96,585 to 97,895 GFF3894 Position (kb) 91 92 93 94 95 96 97Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 90.587 kb on - strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.612 kb on + strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.613 kb on - strand, within GFF3891at 90.960 kb on + strand, within GFF3891at 90.961 kb on - strand, within GFF3891at 90.961 kb on - strand, within GFF3891at 90.961 kb on - strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.996 kb on + strand, within GFF3891at 90.997 kb on - strand, within GFF3891at 90.997 kb on - strand, within GFF3891at 90.997 kb on - strand, within GFF3891at 90.997 kb on - strand, within GFF3891at 90.997 kb on - strand, within GFF3891at 91.068 kb on + strand, within GFF3891at 91.282 kb on + strand, within GFF3892at 91.283 kb on - strand, within GFF3892at 91.328 kb on + strand, within GFF3892at 91.386 kb on + strandat 91.386 kb on + strandat 91.402 kb on + strandat 91.402 kb on + strandat 91.402 kb on + strandat 91.402 kb on + strandat 91.402 kb on + strandat 91.402 kb on + strandat 91.402 kb on + strandat 91.403 kb on - strandat 91.403 kb on - strandat 91.403 kb on - strandat 91.403 kb on - strandat 91.403 kb on - strandat 91.415 kb on + strandat 91.416 kb on + strandat 91.416 kb on + strandat 91.416 kb on + strandat 91.417 kb on - strandat 91.417 kb on - strandat 91.417 kb on - strandat 91.417 kb on - strandat 91.420 kb on - strandat 91.420 kb on - strandat 91.426 kb on - strandat 91.451 kb on + strandat 91.451 kb on + strandat 91.452 kb on - strandat 91.458 kb on - strandat 91.458 kb on - strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.558 kb on + strandat 91.559 kb on - strandat 91.559 kb on - strandat 91.573 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.847 kb on + strandat 91.848 kb on - strandat 91.848 kb on - strandat 91.848 kb on - strandat 92.322 kb on + strand, within GFF3893at 92.525 kb on + strand, within GFF3893at 92.525 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.597 kb on + strand, within GFF3893at 92.598 kb on - strand, within GFF3893at 92.598 kb on - strand, within GFF3893at 92.598 kb on - strand, within GFF3893at 92.598 kb on - strand, within GFF3893at 92.598 kb on - strand, within GFF3893at 92.598 kb on - strand, within GFF3893at 92.598 kb on - strand, within GFF3893at 92.801 kb on + strand, within GFF3893at 92.801 kb on + strand, within GFF3893at 92.801 kb on + strand, within GFF3893at 92.801 kb on + strand, within GFF3893at 92.801 kb on + strand, within GFF3893at 92.801 kb on + strand, within GFF3893at 92.801 kb on + strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 92.802 kb on - strand, within GFF3893at 93.825 kb on + strand, within GFF3893at 93.825 kb on + strand, within GFF3893at 93.826 kb on - strand, within GFF3893at 93.826 kb on - strand, within GFF3893at 93.931 kb on + strand, within GFF3893at 93.931 kb on + strand, within GFF3893at 93.932 kb on - strand, within GFF3893at 94.079 kb on + strand, within GFF3893at 94.079 kb on + strand, within GFF3893at 94.079 kb on + strand, within GFF3893at 94.079 kb on + strand, within GFF3893at 94.079 kb on + strand, within GFF3893at 94.079 kb on + strand, within GFF3893at 94.079 kb on + strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.080 kb on - strand, within GFF3893at 94.110 kb on + strand, within GFF3893at 94.110 kb on + strand, within GFF3893at 94.110 kb on + strand, within GFF3893at 94.111 kb on - strand, within GFF3893at 94.111 kb on - strand, within GFF3893at 94.111 kb on - strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.202 kb on + strand, within GFF3893at 94.203 kb on - strand, within GFF3893at 94.203 kb on - strand, within GFF3893at 94.203 kb on - strand, within GFF3893at 94.280 kb on + strand, within GFF3893at 94.280 kb on + strand, within GFF3893at 94.280 kb on + strand, within GFF3893at 94.280 kb on + strand, within GFF3893at 94.280 kb on + strand, within GFF3893at 94.280 kb on + strand, within GFF3893at 94.281 kb on - strand, within GFF3893at 94.281 kb on - strand, within GFF3893at 94.970 kb on + strand, within GFF3893at 94.970 kb on + strand, within GFF3893at 94.970 kb on + strand, within GFF3893at 94.970 kb on + strand, within GFF3893at 94.970 kb on + strand, within GFF3893at 94.970 kb on + strand, within GFF3893at 95.433 kb on - strand, within GFF3893at 95.441 kb on + strand, within GFF3893at 95.441 kb on + strand, within GFF3893at 95.441 kb on + strand, within GFF3893at 95.442 kb on - strand, within GFF3893at 95.442 kb on - strand, within GFF3893at 95.477 kb on + strand, within GFF3893at 95.477 kb on + strand, within GFF3893at 95.477 kb on + strand, within GFF3893at 95.477 kb on + strand, within GFF3893at 95.478 kb on - strand, within GFF3893at 95.478 kb on - strand, within GFF3893at 95.478 kb on - strand, within GFF3893at 95.478 kb on - strand, within GFF3893at 95.561 kb on + strand, within GFF3893at 95.561 kb on + strand, within GFF3893at 95.561 kb on + strand, within GFF3893at 95.562 kb on - strand, within GFF3893at 95.913 kb on - strand, within GFF3893at 95.913 kb on - strand, within GFF3893at 95.913 kb on - strand, within GFF3893at 95.913 kb on - strand, within GFF3893at 95.934 kb on - strand, within GFF3893at 95.934 kb on - strand, within GFF3893at 95.934 kb on - strand, within GFF3893at 95.934 kb on - strand, within GFF3893at 95.934 kb on - strand, within GFF3893at 95.934 kb on - strand, within GFF3893at 95.934 kb on - strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.954 kb on + strand, within GFF3893at 95.990 kb on + strand, within GFF3893at 95.990 kb on + strand, within GFF3893at 97.331 kb on - strand, within GFF3894

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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90,587 - GFF3891 0.30 -0.3
90,612 + GFF3891 0.33 -1.2
90,612 + GFF3891 0.33 -1.1
90,612 + GFF3891 0.33 -1.4
90,612 + GFF3891 0.33 -2.4
90,612 + GFF3891 0.33 -2.0
90,612 + GFF3891 0.33 -0.9
90,612 + GFF3891 0.33 -1.8
90,612 + GFF3891 0.33 -0.7
90,613 - GFF3891 0.33 +1.7
90,613 - GFF3891 0.33 +1.6
90,613 - GFF3891 0.33 +0.4
90,613 - GFF3891 0.33 +0.2
90,613 - GFF3891 0.33 +0.0
90,613 - GFF3891 0.33 -0.6
90,613 - GFF3891 0.33 +0.7
90,613 - GFF3891 0.33 +0.7
90,960 + GFF3891 0.70 -3.7
90,961 - GFF3891 0.70 -0.6
90,961 - GFF3891 0.70 -2.1
90,961 - GFF3891 0.70 -0.3
90,996 + GFF3891 0.73 -0.4
90,996 + GFF3891 0.73 -3.6
90,996 + GFF3891 0.73 -3.3
90,996 + GFF3891 0.73 -4.7
90,996 + GFF3891 0.73 -2.3
90,996 + GFF3891 0.73 -0.6
90,996 + GFF3891 0.73 -1.1
90,996 + GFF3891 0.73 -3.6
90,997 - GFF3891 0.74 +0.0
90,997 - GFF3891 0.74 -2.7
90,997 - GFF3891 0.74 -1.8
90,997 - GFF3891 0.74 -2.5
90,997 - GFF3891 0.74 -1.0
91,068 + GFF3891 0.81 -3.8
91,282 + GFF3892 0.33 -0.8
91,283 - GFF3892 0.34 -0.6
91,328 + GFF3892 0.73 -1.1
91,386 + -0.6
91,386 + +1.4
91,402 + -2.1
91,402 + -3.2
91,402 + -1.3
91,402 + +1.9
91,402 + -2.7
91,402 + +1.9
91,402 + -2.7
91,403 - -1.8
91,403 - +2.6
91,403 - +0.0
91,403 - -0.2
91,403 - -1.4
91,415 + -2.1
91,416 + +0.1
91,416 + -1.0
91,416 + -2.1
91,417 - +0.1
91,417 - -2.0
91,417 - -0.4
91,417 - +1.1
91,420 - +2.7
91,420 - -1.5
91,426 - -0.5
91,451 + -1.8
91,451 + -0.3
91,452 - -0.4
91,458 - -3.2
91,458 - +0.4
91,558 + +0.4
91,558 + -0.3
91,558 + -1.3
91,558 + -0.7
91,558 + -2.1
91,558 + -2.7
91,558 + +1.4
91,558 + +0.0
91,558 + -0.3
91,558 + -1.3
91,558 + +1.1
91,559 - -3.6
91,559 - -1.9
91,573 + -0.9
91,847 + +2.0
91,847 + -1.0
91,847 + -1.2
91,847 + -0.6
91,847 + -2.2
91,847 + -1.3
91,847 + -0.8
91,847 + -3.1
91,847 + -0.7
91,847 + -0.6
91,847 + -0.4
91,847 + +0.8
91,847 + -1.8
91,847 + -0.3
91,847 + +0.4
91,848 - -1.5
91,848 - -1.6
91,848 - +1.2
92,322 + GFF3893 0.17 -1.4
92,525 + GFF3893 0.21 +0.7
92,525 + GFF3893 0.21 -0.7
92,597 + GFF3893 0.22 +0.1
92,597 + GFF3893 0.22 -2.4
92,597 + GFF3893 0.22 -0.5
92,597 + GFF3893 0.22 +0.2
92,597 + GFF3893 0.22 -0.6
92,597 + GFF3893 0.22 +0.4
92,597 + GFF3893 0.22 +1.4
92,597 + GFF3893 0.22 +0.4
92,598 - GFF3893 0.22 +0.8
92,598 - GFF3893 0.22 +0.0
92,598 - GFF3893 0.22 -1.0
92,598 - GFF3893 0.22 +0.7
92,598 - GFF3893 0.22 -2.4
92,598 - GFF3893 0.22 -0.1
92,598 - GFF3893 0.22 -1.8
92,801 + GFF3893 0.26 +0.1
92,801 + GFF3893 0.26 +1.0
92,801 + GFF3893 0.26 -0.8
92,801 + GFF3893 0.26 +0.2
92,801 + GFF3893 0.26 -0.6
92,801 + GFF3893 0.26 +0.3
92,801 + GFF3893 0.26 -1.4
92,802 - GFF3893 0.27 +0.5
92,802 - GFF3893 0.27 +0.1
92,802 - GFF3893 0.27 -0.8
92,802 - GFF3893 0.27 -0.6
92,802 - GFF3893 0.27 -1.0
92,802 - GFF3893 0.27 -2.6
92,802 - GFF3893 0.27 +0.8
92,802 - GFF3893 0.27 +0.4
93,825 + GFF3893 0.47 +0.6
93,825 + GFF3893 0.47 +0.0
93,826 - GFF3893 0.47 +1.6
93,826 - GFF3893 0.47 +0.4
93,931 + GFF3893 0.49 -1.7
93,931 + GFF3893 0.49 -0.3
93,932 - GFF3893 0.49 -3.0
94,079 + GFF3893 0.52 -0.2
94,079 + GFF3893 0.52 -0.4
94,079 + GFF3893 0.52 +0.3
94,079 + GFF3893 0.52 -2.4
94,079 + GFF3893 0.52 +1.7
94,079 + GFF3893 0.52 -0.5
94,079 + GFF3893 0.52 -0.6
94,080 - GFF3893 0.52 -0.3
94,080 - GFF3893 0.52 -3.4
94,080 - GFF3893 0.52 -0.0
94,080 - GFF3893 0.52 -0.3
94,080 - GFF3893 0.52 -3.6
94,080 - GFF3893 0.52 -0.7
94,080 - GFF3893 0.52 -0.5
94,080 - GFF3893 0.52 +0.1
94,080 - GFF3893 0.52 +0.4
94,110 + GFF3893 0.52 -0.4
94,110 + GFF3893 0.52 -0.8
94,110 + GFF3893 0.52 +0.9
94,111 - GFF3893 0.52 -0.5
94,111 - GFF3893 0.52 +0.4
94,111 - GFF3893 0.52 +0.9
94,202 + GFF3893 0.54 -1.4
94,202 + GFF3893 0.54 -1.0
94,202 + GFF3893 0.54 +0.2
94,202 + GFF3893 0.54 -1.0
94,202 + GFF3893 0.54 -0.3
94,202 + GFF3893 0.54 +0.9
94,202 + GFF3893 0.54 -2.1
94,202 + GFF3893 0.54 -0.3
94,202 + GFF3893 0.54 -0.8
94,202 + GFF3893 0.54 +0.4
94,203 - GFF3893 0.54 +1.8
94,203 - GFF3893 0.54 -1.1
94,203 - GFF3893 0.54 +1.6
94,280 + GFF3893 0.56 -2.5
94,280 + GFF3893 0.56 -1.6
94,280 + GFF3893 0.56 -1.0
94,280 + GFF3893 0.56 +0.1
94,280 + GFF3893 0.56 -0.9
94,280 + GFF3893 0.56 +1.0
94,281 - GFF3893 0.56 -3.0
94,281 - GFF3893 0.56 -1.0
94,970 + GFF3893 0.70 +2.1
94,970 + GFF3893 0.70 -0.4
94,970 + GFF3893 0.70 +0.4
94,970 + GFF3893 0.70 -2.3
94,970 + GFF3893 0.70 +0.0
94,970 + GFF3893 0.70 +0.3
95,433 - GFF3893 0.79 +1.6
95,441 + GFF3893 0.79 -1.0
95,441 + GFF3893 0.79 +0.2
95,441 + GFF3893 0.79 -3.6
95,442 - GFF3893 0.79 -2.6
95,442 - GFF3893 0.79 -1.1
95,477 + GFF3893 0.80 -0.8
95,477 + GFF3893 0.80 +0.2
95,477 + GFF3893 0.80 -0.7
95,477 + GFF3893 0.80 +2.0
95,478 - GFF3893 0.80 +2.1
95,478 - GFF3893 0.80 -3.7
95,478 - GFF3893 0.80 +1.7
95,478 - GFF3893 0.80 +1.4
95,561 + GFF3893 0.81 -1.8
95,561 + GFF3893 0.81 +0.2
95,561 + GFF3893 0.81 -0.6
95,562 - GFF3893 0.81 -1.4
95,913 - GFF3893 0.88 +1.5
95,913 - GFF3893 0.88 +1.5
95,913 - GFF3893 0.88 -1.9
95,913 - GFF3893 0.88 -2.2
95,934 - GFF3893 0.89 +0.5
95,934 - GFF3893 0.89 +0.9
95,934 - GFF3893 0.89 -2.9
95,934 - GFF3893 0.89 -0.6
95,934 - GFF3893 0.89 -1.4
95,934 - GFF3893 0.89 +0.9
95,934 - GFF3893 0.89 +0.2
95,954 + GFF3893 0.89 -1.3
95,954 + GFF3893 0.89 -1.1
95,954 + GFF3893 0.89 +1.4
95,954 + GFF3893 0.89 +0.4
95,954 + GFF3893 0.89 +0.8
95,954 + GFF3893 0.89 +0.4
95,954 + GFF3893 0.89 -2.6
95,954 + GFF3893 0.89 -2.4
95,990 + GFF3893 0.90 +0.9
95,990 + GFF3893 0.90 +1.2
97,331 - GFF3894 0.57 +2.0

Or see this region's nucleotide sequence