Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3817 and GFF3818 are separated by 163 nucleotides GFF3818 and GFF3819 are separated by 49 nucleotides GFF3819 and GFF3820 are separated by 5 nucleotides
GFF3817 - RNA polymerase sigma factor, at 3,050 to 3,643
GFF3817
GFF3818 - hypothetical protein, at 3,807 to 4,346
GFF3818
GFF3819 - hypothetical protein, at 4,396 to 5,703
GFF3819
GFF3820 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 5,709 to 7,142
GFF3820
Position (kb) 4
5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3.423 kb on + strand, within GFF3817 at 3.540 kb on + strand, within GFF3817 at 3.541 kb on - strand, within GFF3817 at 3.541 kb on - strand, within GFF3817 at 3.661 kb on - strand at 3.661 kb on - strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.662 kb on + strand at 3.663 kb on - strand at 3.663 kb on - strand at 3.663 kb on - strand at 3.663 kb on - strand at 3.663 kb on - strand at 3.758 kb on + strand at 3.759 kb on + strand at 3.759 kb on + strand at 3.759 kb on + strand at 3.759 kb on + strand at 3.760 kb on - strand at 3.760 kb on - strand at 3.760 kb on - strand at 3.760 kb on - strand at 3.761 kb on + strand at 3.761 kb on + strand at 3.762 kb on - strand at 3.762 kb on - strand at 3.852 kb on + strand at 3.852 kb on + strand at 3.853 kb on - strand at 3.853 kb on - strand at 3.900 kb on + strand, within GFF3818 at 3.901 kb on - strand, within GFF3818 at 3.901 kb on - strand, within GFF3818 at 3.903 kb on + strand, within GFF3818 at 3.903 kb on + strand, within GFF3818 at 3.903 kb on + strand, within GFF3818 at 3.904 kb on - strand, within GFF3818 at 3.904 kb on - strand, within GFF3818 at 3.904 kb on - strand, within GFF3818 at 3.904 kb on - strand, within GFF3818 at 3.908 kb on + strand, within GFF3818 at 3.908 kb on + strand, within GFF3818 at 3.909 kb on - strand, within GFF3818 at 4.116 kb on + strand, within GFF3818 at 4.116 kb on + strand, within GFF3818 at 4.117 kb on - strand, within GFF3818 at 4.122 kb on + strand, within GFF3818 at 4.122 kb on + strand, within GFF3818 at 4.122 kb on + strand, within GFF3818 at 4.122 kb on + strand, within GFF3818 at 4.122 kb on + strand, within GFF3818 at 4.123 kb on - strand, within GFF3818 at 4.344 kb on + strand at 4.344 kb on + strand at 4.345 kb on - strand at 4.345 kb on - strand at 4.345 kb on - strand at 4.345 kb on - strand at 4.345 kb on - strand at 4.489 kb on + strand at 4.489 kb on + strand at 4.601 kb on - strand, within GFF3819 at 4.601 kb on - strand, within GFF3819 at 4.601 kb on - strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.684 kb on + strand, within GFF3819 at 4.685 kb on - strand, within GFF3819 at 4.685 kb on - strand, within GFF3819 at 4.685 kb on - strand, within GFF3819 at 4.750 kb on + strand, within GFF3819 at 5.017 kb on + strand, within GFF3819 at 5.050 kb on + strand, within GFF3819 at 5.050 kb on + strand, within GFF3819 at 5.050 kb on + strand, within GFF3819 at 5.051 kb on - strand, within GFF3819 at 5.051 kb on - strand, within GFF3819 at 5.051 kb on - strand, within GFF3819 at 5.557 kb on + strand, within GFF3819 at 5.557 kb on + strand, within GFF3819 at 5.558 kb on - strand, within GFF3819 at 5.641 kb on + strand at 5.710 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.806 kb on + strand at 5.809 kb on + strand at 5.810 kb on - strand at 5.839 kb on + strand at 5.839 kb on + strand at 5.840 kb on - strand at 5.840 kb on - strand at 5.998 kb on + strand, within GFF3820 at 5.998 kb on + strand, within GFF3820 at 5.999 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820 at 6.665 kb on - strand, within GFF3820
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 3,423 + GFF3817 0.63 -1.1 3,540 + GFF3817 0.82 -2.2 3,541 - GFF3817 0.83 +0.5 3,541 - GFF3817 0.83 -3.1 3,661 - +0.2 3,661 - +0.0 3,662 + -0.5 3,662 + +0.7 3,662 + +0.0 3,662 + +1.0 3,662 + -1.9 3,662 + -2.7 3,662 + -1.1 3,662 + +0.0 3,662 + -2.2 3,663 - -1.8 3,663 - +2.1 3,663 - -0.3 3,663 - -2.0 3,663 - +0.3 3,758 + +0.3 3,759 + +0.9 3,759 + -0.3 3,759 + +0.0 3,759 + -0.4 3,760 - +1.1 3,760 - +0.4 3,760 - -0.8 3,760 - +1.5 3,761 + -0.6 3,761 + -0.6 3,762 - +0.2 3,762 - -1.8 3,852 + +0.6 3,852 + -1.3 3,853 - -0.6 3,853 - -1.9 3,900 + GFF3818 0.17 -0.8 3,901 - GFF3818 0.17 +0.4 3,901 - GFF3818 0.17 +2.5 3,903 + GFF3818 0.18 +0.0 3,903 + GFF3818 0.18 +1.1 3,903 + GFF3818 0.18 -0.1 3,904 - GFF3818 0.18 -3.0 3,904 - GFF3818 0.18 -0.3 3,904 - GFF3818 0.18 +0.0 3,904 - GFF3818 0.18 +2.2 3,908 + GFF3818 0.19 -0.3 3,908 + GFF3818 0.19 -1.4 3,909 - GFF3818 0.19 -0.3 4,116 + GFF3818 0.57 +0.9 4,116 + GFF3818 0.57 +0.1 4,117 - GFF3818 0.57 -2.1 4,122 + GFF3818 0.58 -1.4 4,122 + GFF3818 0.58 +0.2 4,122 + GFF3818 0.58 -2.7 4,122 + GFF3818 0.58 +0.2 4,122 + GFF3818 0.58 -1.0 4,123 - GFF3818 0.59 -0.6 4,344 + -3.9 4,344 + +1.7 4,345 - -0.3 4,345 - -1.5 4,345 - -2.3 4,345 - +0.4 4,345 - +0.3 4,489 + +2.0 4,489 + +0.1 4,601 - GFF3819 0.16 -3.2 4,601 - GFF3819 0.16 +0.7 4,601 - GFF3819 0.16 -1.6 4,684 + GFF3819 0.22 +0.4 4,684 + GFF3819 0.22 -0.6 4,684 + GFF3819 0.22 -2.1 4,684 + GFF3819 0.22 +0.4 4,684 + GFF3819 0.22 -2.6 4,684 + GFF3819 0.22 -2.8 4,684 + GFF3819 0.22 +0.9 4,684 + GFF3819 0.22 -1.6 4,684 + GFF3819 0.22 +1.7 4,685 - GFF3819 0.22 -2.4 4,685 - GFF3819 0.22 -0.3 4,685 - GFF3819 0.22 +1.2 4,750 + GFF3819 0.27 -0.6 5,017 + GFF3819 0.47 +0.2 5,050 + GFF3819 0.50 +1.3 5,050 + GFF3819 0.50 +2.4 5,050 + GFF3819 0.50 +0.4 5,051 - GFF3819 0.50 -1.6 5,051 - GFF3819 0.50 -1.3 5,051 - GFF3819 0.50 -0.3 5,557 + GFF3819 0.89 +0.8 5,557 + GFF3819 0.89 +1.8 5,558 - GFF3819 0.89 -0.2 5,641 + -1.5 5,710 + -1.3 5,743 + -1.5 5,743 + +1.7 5,743 + +0.8 5,743 + -2.0 5,743 + -0.4 5,744 - +0.0 5,744 - -0.7 5,744 - -1.1 5,744 - -1.8 5,744 - -1.8 5,806 + -0.3 5,809 + -1.1 5,810 - +0.6 5,839 + -0.9 5,839 + +0.4 5,840 - +0.9 5,840 - +2.1 5,998 + GFF3820 0.20 +0.4 5,998 + GFF3820 0.20 +1.8 5,999 - GFF3820 0.20 +0.2 6,665 - GFF3820 0.67 +1.1 6,665 - GFF3820 0.67 -0.7 6,665 - GFF3820 0.67 -1.1 6,665 - GFF3820 0.67 +1.6
Or see this region's nucleotide sequence