Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3809 and GFF3810 are separated by 32 nucleotides GFF3810 and GFF3811 are separated by 7 nucleotides
GFF3809 - Outer membrane receptor proteins, mostly Fe transport, at 308,741 to 311,047
GFF3809
GFF3810 - Conserved membrane protein in copper uptake, YcnI / Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II, at 311,080 to 311,991
GFF3810
GFF3811 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 311,999 to 313,723
GFF3811
Position (kb) 311
312 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 310.151 kb on + strand, within GFF3809 at 310.151 kb on + strand, within GFF3809 at 310.151 kb on + strand, within GFF3809 at 310.151 kb on + strand, within GFF3809 at 310.152 kb on - strand, within GFF3809 at 310.152 kb on - strand, within GFF3809 at 310.152 kb on - strand, within GFF3809 at 310.152 kb on - strand, within GFF3809 at 310.226 kb on + strand, within GFF3809 at 310.226 kb on + strand, within GFF3809 at 310.227 kb on - strand, within GFF3809 at 310.286 kb on + strand, within GFF3809 at 310.286 kb on + strand, within GFF3809 at 310.286 kb on + strand, within GFF3809 at 310.286 kb on + strand, within GFF3809 at 310.286 kb on + strand, within GFF3809 at 310.286 kb on + strand, within GFF3809 at 310.286 kb on + strand, within GFF3809 at 310.287 kb on - strand, within GFF3809 at 310.287 kb on - strand, within GFF3809 at 310.287 kb on - strand, within GFF3809 at 310.287 kb on - strand, within GFF3809 at 310.287 kb on - strand, within GFF3809 at 310.287 kb on - strand, within GFF3809 at 310.287 kb on - strand, within GFF3809 at 310.362 kb on + strand, within GFF3809 at 310.388 kb on + strand, within GFF3809 at 310.388 kb on + strand, within GFF3809 at 310.388 kb on + strand, within GFF3809 at 310.388 kb on + strand, within GFF3809 at 310.388 kb on + strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.389 kb on - strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.553 kb on + strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.554 kb on - strand, within GFF3809 at 310.555 kb on + strand, within GFF3809 at 310.556 kb on - strand, within GFF3809 at 310.556 kb on - strand, within GFF3809 at 310.556 kb on - strand, within GFF3809 at 310.784 kb on + strand, within GFF3809 at 310.784 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.808 kb on + strand, within GFF3809 at 310.809 kb on - strand, within GFF3809 at 310.809 kb on - strand, within GFF3809 at 310.809 kb on - strand, within GFF3809 at 310.809 kb on - strand, within GFF3809 at 310.809 kb on - strand, within GFF3809 at 310.809 kb on - strand, within GFF3809 at 310.809 kb on - strand, within GFF3809 at 310.826 kb on + strand at 310.826 kb on + strand at 310.827 kb on - strand at 310.827 kb on - strand at 310.827 kb on - strand at 310.827 kb on - strand at 310.841 kb on + strand at 310.841 kb on + strand at 310.841 kb on + strand at 310.842 kb on - strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.880 kb on + strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.920 kb on + strand at 310.920 kb on + strand at 310.920 kb on + strand at 310.920 kb on + strand at 310.920 kb on + strand at 310.920 kb on + strand at 310.920 kb on + strand at 310.920 kb on + strand at 310.921 kb on - strand at 310.921 kb on - strand at 310.921 kb on - strand at 310.921 kb on - strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.985 kb on + strand at 310.986 kb on - strand at 310.986 kb on - strand at 310.986 kb on - strand at 310.986 kb on - strand at 310.986 kb on - strand at 310.986 kb on - strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.018 kb on + strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.019 kb on - strand at 311.203 kb on + strand, within GFF3810 at 311.203 kb on + strand, within GFF3810 at 311.203 kb on + strand, within GFF3810 at 311.203 kb on + strand, within GFF3810 at 311.204 kb on - strand, within GFF3810 at 311.204 kb on - strand, within GFF3810 at 311.204 kb on - strand, within GFF3810 at 311.288 kb on + strand, within GFF3810 at 311.288 kb on + strand, within GFF3810 at 311.288 kb on + strand, within GFF3810 at 311.288 kb on + strand, within GFF3810 at 311.288 kb on + strand, within GFF3810 at 311.289 kb on - strand, within GFF3810 at 311.289 kb on - strand, within GFF3810 at 311.289 kb on - strand, within GFF3810 at 311.289 kb on - strand, within GFF3810 at 311.749 kb on + strand, within GFF3810 at 311.818 kb on + strand, within GFF3810 at 311.818 kb on + strand, within GFF3810 at 311.818 kb on + strand, within GFF3810 at 311.819 kb on - strand, within GFF3810 at 311.819 kb on - strand, within GFF3810 at 311.937 kb on - strand at 312.000 kb on + strand at 312.405 kb on + strand, within GFF3811 at 312.405 kb on + strand, within GFF3811 at 312.405 kb on + strand, within GFF3811 at 312.406 kb on - strand, within GFF3811 at 312.406 kb on - strand, within GFF3811 at 312.406 kb on - strand, within GFF3811 at 312.406 kb on - strand, within GFF3811 at 312.450 kb on + strand, within GFF3811 at 312.450 kb on + strand, within GFF3811 at 312.451 kb on - strand, within GFF3811 at 312.570 kb on + strand, within GFF3811 at 312.570 kb on + strand, within GFF3811 at 312.570 kb on + strand, within GFF3811 at 312.570 kb on + strand, within GFF3811 at 312.570 kb on + strand, within GFF3811 at 312.571 kb on - strand, within GFF3811 at 312.571 kb on - strand, within GFF3811
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 310,151 + GFF3809 0.61 +2.5 310,151 + GFF3809 0.61 -0.7 310,151 + GFF3809 0.61 -1.1 310,151 + GFF3809 0.61 -2.0 310,152 - GFF3809 0.61 +1.3 310,152 - GFF3809 0.61 -1.1 310,152 - GFF3809 0.61 -1.2 310,152 - GFF3809 0.61 -1.5 310,226 + GFF3809 0.64 -0.2 310,226 + GFF3809 0.64 +2.0 310,227 - GFF3809 0.64 +0.7 310,286 + GFF3809 0.67 +0.3 310,286 + GFF3809 0.67 -0.1 310,286 + GFF3809 0.67 +1.1 310,286 + GFF3809 0.67 +0.1 310,286 + GFF3809 0.67 -1.2 310,286 + GFF3809 0.67 -2.0 310,286 + GFF3809 0.67 -1.2 310,287 - GFF3809 0.67 +0.3 310,287 - GFF3809 0.67 +0.9 310,287 - GFF3809 0.67 -0.6 310,287 - GFF3809 0.67 -0.3 310,287 - GFF3809 0.67 -0.8 310,287 - GFF3809 0.67 -3.4 310,287 - GFF3809 0.67 -3.3 310,362 + GFF3809 0.70 +1.0 310,388 + GFF3809 0.71 +0.9 310,388 + GFF3809 0.71 +0.9 310,388 + GFF3809 0.71 -0.2 310,388 + GFF3809 0.71 +1.1 310,388 + GFF3809 0.71 +0.8 310,389 - GFF3809 0.71 +0.0 310,389 - GFF3809 0.71 -1.1 310,389 - GFF3809 0.71 -2.2 310,389 - GFF3809 0.71 +1.0 310,389 - GFF3809 0.71 +0.2 310,389 - GFF3809 0.71 +0.8 310,389 - GFF3809 0.71 +0.7 310,389 - GFF3809 0.71 +2.1 310,553 + GFF3809 0.79 +0.0 310,553 + GFF3809 0.79 +0.3 310,553 + GFF3809 0.79 +0.4 310,553 + GFF3809 0.79 -0.3 310,553 + GFF3809 0.79 -0.3 310,553 + GFF3809 0.79 -1.6 310,553 + GFF3809 0.79 +0.4 310,553 + GFF3809 0.79 -0.7 310,553 + GFF3809 0.79 +0.2 310,553 + GFF3809 0.79 -0.5 310,553 + GFF3809 0.79 -0.1 310,553 + GFF3809 0.79 -1.1 310,554 - GFF3809 0.79 -0.2 310,554 - GFF3809 0.79 +0.6 310,554 - GFF3809 0.79 -3.8 310,554 - GFF3809 0.79 -1.2 310,554 - GFF3809 0.79 -1.5 310,554 - GFF3809 0.79 +1.6 310,554 - GFF3809 0.79 -0.1 310,554 - GFF3809 0.79 -2.3 310,554 - GFF3809 0.79 +1.8 310,554 - GFF3809 0.79 +0.3 310,554 - GFF3809 0.79 -0.2 310,554 - GFF3809 0.79 +0.4 310,554 - GFF3809 0.79 -1.7 310,554 - GFF3809 0.79 +1.1 310,555 + GFF3809 0.79 -1.4 310,556 - GFF3809 0.79 -0.2 310,556 - GFF3809 0.79 -2.1 310,556 - GFF3809 0.79 -0.2 310,784 + GFF3809 0.89 -2.6 310,784 + GFF3809 0.89 -1.0 310,808 + GFF3809 0.90 -1.0 310,808 + GFF3809 0.90 +0.2 310,808 + GFF3809 0.90 -0.9 310,808 + GFF3809 0.90 -0.5 310,808 + GFF3809 0.90 +0.2 310,808 + GFF3809 0.90 +2.3 310,808 + GFF3809 0.90 +0.0 310,808 + GFF3809 0.90 -0.8 310,808 + GFF3809 0.90 -1.0 310,808 + GFF3809 0.90 -2.6 310,809 - GFF3809 0.90 -1.2 310,809 - GFF3809 0.90 +0.9 310,809 - GFF3809 0.90 -1.4 310,809 - GFF3809 0.90 +1.4 310,809 - GFF3809 0.90 +0.3 310,809 - GFF3809 0.90 -0.1 310,809 - GFF3809 0.90 -3.1 310,826 + -2.5 310,826 + +0.8 310,827 - +0.6 310,827 - -2.3 310,827 - +1.4 310,827 - +0.3 310,841 + -0.1 310,841 + +0.1 310,841 + -1.0 310,842 - -1.0 310,880 + -1.5 310,880 + +0.4 310,880 + -0.4 310,880 + -1.9 310,880 + +0.2 310,880 + -0.8 310,880 + +1.2 310,880 + +0.7 310,880 + +0.2 310,880 + +1.3 310,880 + +0.6 310,880 + +1.3 310,880 + -0.5 310,880 + -0.5 310,880 + -2.7 310,880 + +0.6 310,881 - -0.2 310,881 - +0.6 310,881 - +0.0 310,881 - +0.0 310,881 - +0.3 310,881 - -1.3 310,881 - +1.6 310,920 + -0.1 310,920 + -1.1 310,920 + -0.2 310,920 + +1.4 310,920 + -2.3 310,920 + +0.8 310,920 + -2.6 310,920 + -1.7 310,921 - -2.3 310,921 - -1.0 310,921 - -1.7 310,921 - -3.6 310,985 + -0.3 310,985 + -0.1 310,985 + -1.0 310,985 + -0.1 310,985 + -2.4 310,985 + +1.1 310,985 + -1.6 310,985 + +0.6 310,985 + -1.7 310,986 - +0.9 310,986 - -2.3 310,986 - -0.4 310,986 - -2.1 310,986 - -1.4 310,986 - -2.7 311,018 + -3.9 311,018 + -0.8 311,018 + +0.3 311,018 + -1.5 311,018 + +0.0 311,018 + -2.7 311,018 + -2.3 311,018 + +0.3 311,018 + -0.9 311,018 + +1.6 311,018 + -1.8 311,018 + -0.2 311,018 + -0.5 311,018 + -1.8 311,018 + +0.3 311,018 + +1.1 311,018 + -0.8 311,018 + -0.3 311,019 - +0.8 311,019 - -0.5 311,019 - -0.1 311,019 - +1.7 311,019 - +0.3 311,019 - -0.1 311,019 - -1.2 311,019 - +0.0 311,019 - -2.9 311,019 - -0.5 311,019 - +0.6 311,019 - -0.7 311,019 - +0.7 311,019 - -0.2 311,019 - +0.9 311,019 - +0.8 311,019 - +0.8 311,203 + GFF3810 0.13 +0.5 311,203 + GFF3810 0.13 -0.3 311,203 + GFF3810 0.13 +1.9 311,203 + GFF3810 0.13 -1.1 311,204 - GFF3810 0.14 +0.4 311,204 - GFF3810 0.14 +1.8 311,204 - GFF3810 0.14 -2.2 311,288 + GFF3810 0.23 +0.0 311,288 + GFF3810 0.23 -0.6 311,288 + GFF3810 0.23 +0.8 311,288 + GFF3810 0.23 -1.1 311,288 + GFF3810 0.23 +0.9 311,289 - GFF3810 0.23 -0.6 311,289 - GFF3810 0.23 -0.5 311,289 - GFF3810 0.23 -0.2 311,289 - GFF3810 0.23 -3.7 311,749 + GFF3810 0.73 -0.8 311,818 + GFF3810 0.81 +1.3 311,818 + GFF3810 0.81 +1.0 311,818 + GFF3810 0.81 +0.3 311,819 - GFF3810 0.81 +0.2 311,819 - GFF3810 0.81 -1.7 311,937 - -0.5 312,000 + -0.5 312,405 + GFF3811 0.24 +0.2 312,405 + GFF3811 0.24 -0.8 312,405 + GFF3811 0.24 +1.5 312,406 - GFF3811 0.24 +0.9 312,406 - GFF3811 0.24 -1.4 312,406 - GFF3811 0.24 +0.7 312,406 - GFF3811 0.24 -0.2 312,450 + GFF3811 0.26 -1.5 312,450 + GFF3811 0.26 +0.5 312,451 - GFF3811 0.26 +1.6 312,570 + GFF3811 0.33 -0.4 312,570 + GFF3811 0.33 -1.4 312,570 + GFF3811 0.33 +0.7 312,570 + GFF3811 0.33 -3.1 312,570 + GFF3811 0.33 +1.5 312,571 - GFF3811 0.33 -3.6 312,571 - GFF3811 0.33 -2.7
Or see this region's nucleotide sequence