Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF371 and GFF372 are separated by 5 nucleotides GFF372 and GFF373 are separated by 45 nucleotides GFF373 and GFF374 are separated by 10 nucleotides GFF374 and GFF375 are separated by 66 nucleotides
GFF371 - RNA-binding protein YhbY, at 402,678 to 403,082
GFF371
GFF372 - PMID: 11481431, at 403,088 to 403,843
GFF372
GFF373 - Probable transmembrane protein, at 403,889 to 404,305
GFF373
GFF374 - Transcription elongation factor GreA, at 404,316 to 404,792
GFF374
GFF375 - hypothetical protein, at 404,859 to 405,728
GFF375
Position (kb) 403
404
405 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.943 kb on - strand, within GFF371 at 403.114 kb on + strand at 403.114 kb on + strand at 403.115 kb on - strand at 403.115 kb on - strand at 403.143 kb on - strand at 403.154 kb on + strand at 403.155 kb on - strand at 403.169 kb on + strand, within GFF372 at 403.170 kb on - strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.361 kb on - strand, within GFF372 at 403.451 kb on + strand, within GFF372 at 403.499 kb on + strand, within GFF372 at 403.500 kb on - strand, within GFF372 at 403.539 kb on - strand, within GFF372 at 403.575 kb on - strand, within GFF372 at 403.592 kb on + strand, within GFF372 at 403.592 kb on + strand, within GFF372 at 403.593 kb on - strand, within GFF372 at 403.593 kb on - strand, within GFF372 at 403.631 kb on + strand, within GFF372 at 403.631 kb on + strand, within GFF372 at 403.664 kb on + strand, within GFF372 at 403.664 kb on + strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.829 kb on + strand at 403.829 kb on + strand at 403.886 kb on - strand at 403.886 kb on - strand at 403.886 kb on - strand at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.023 kb on - strand, within GFF373 at 404.023 kb on - strand, within GFF373 at 404.323 kb on + strand at 404.323 kb on + strand at 404.323 kb on + strand at 404.324 kb on - strand at 404.324 kb on - strand at 404.344 kb on + strand at 404.470 kb on - strand, within GFF374 at 404.470 kb on - strand, within GFF374 at 404.479 kb on + strand, within GFF374 at 404.479 kb on + strand, within GFF374 at 404.479 kb on + strand, within GFF374 at 404.650 kb on + strand, within GFF374 at 404.650 kb on + strand, within GFF374 at 404.651 kb on - strand, within GFF374 at 404.808 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.920 kb on + strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.921 kb on - strand at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.962 kb on + strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 404.963 kb on - strand, within GFF375 at 405.061 kb on + strand, within GFF375 at 405.061 kb on + strand, within GFF375 at 405.061 kb on + strand, within GFF375 at 405.062 kb on - strand, within GFF375 at 405.062 kb on - strand, within GFF375 at 405.112 kb on + strand, within GFF375 at 405.113 kb on - strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.175 kb on + strand, within GFF375 at 405.176 kb on - strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.295 kb on + strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375 at 405.296 kb on - strand, within GFF375
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 402,942 + GFF371 0.65 +0.2 402,942 + GFF371 0.65 -0.2 402,942 + GFF371 0.65 -1.0 402,942 + GFF371 0.65 -1.6 402,943 - GFF371 0.65 -1.4 403,114 + +1.8 403,114 + -0.6 403,115 - +1.8 403,115 - -0.8 403,143 - +0.8 403,154 + +1.8 403,155 - +1.8 403,169 + GFF372 0.11 +1.8 403,170 - GFF372 0.11 +0.2 403,346 + GFF372 0.34 +1.8 403,346 + GFF372 0.34 -1.8 403,346 + GFF372 0.34 +0.8 403,347 - GFF372 0.34 +0.8 403,347 - GFF372 0.34 +1.8 403,347 - GFF372 0.34 -0.8 403,361 - GFF372 0.36 -1.4 403,451 + GFF372 0.48 +1.8 403,499 + GFF372 0.54 +0.8 403,500 - GFF372 0.54 +0.8 403,539 - GFF372 0.60 +0.2 403,575 - GFF372 0.64 +1.8 403,592 + GFF372 0.67 +0.8 403,592 + GFF372 0.67 +1.8 403,593 - GFF372 0.67 +0.8 403,593 - GFF372 0.67 -1.8 403,631 + GFF372 0.72 -0.8 403,631 + GFF372 0.72 +1.8 403,664 + GFF372 0.76 +1.8 403,664 + GFF372 0.76 +0.2 403,665 - GFF372 0.76 -1.2 403,665 - GFF372 0.76 -1.0 403,665 - GFF372 0.76 +0.8 403,665 - GFF372 0.76 +0.8 403,694 + GFF372 0.80 +1.8 403,694 + GFF372 0.80 +1.8 403,694 + GFF372 0.80 +0.2 403,694 + GFF372 0.80 +1.8 403,694 + GFF372 0.80 +0.2 403,695 - GFF372 0.80 +0.8 403,695 - GFF372 0.80 -1.2 403,695 - GFF372 0.80 +1.8 403,695 - GFF372 0.80 +0.2 403,829 + +1.8 403,829 + -0.2 403,886 - +0.2 403,886 - +0.9 403,886 - +0.3 403,953 + GFF373 0.15 -1.0 403,953 + GFF373 0.15 -1.8 403,953 + GFF373 0.15 +1.5 403,953 + GFF373 0.15 -1.3 403,953 + GFF373 0.15 -0.6 403,953 + GFF373 0.15 -0.5 403,953 + GFF373 0.15 +0.8 403,953 + GFF373 0.15 -1.3 403,953 + GFF373 0.15 +0.5 403,953 + GFF373 0.15 -1.5 403,953 + GFF373 0.15 +0.0 403,953 + GFF373 0.15 -1.5 403,954 - GFF373 0.16 +0.7 403,954 - GFF373 0.16 -0.2 403,954 - GFF373 0.16 -1.9 403,954 - GFF373 0.16 -1.8 403,954 - GFF373 0.16 +0.5 403,954 - GFF373 0.16 -1.1 403,954 - GFF373 0.16 -1.2 403,954 - GFF373 0.16 -3.4 403,954 - GFF373 0.16 -1.1 403,954 - GFF373 0.16 -0.9 403,954 - GFF373 0.16 -1.4 403,954 - GFF373 0.16 -3.9 403,954 - GFF373 0.16 -0.8 403,954 - GFF373 0.16 +1.4 404,022 + GFF373 0.32 -0.9 404,022 + GFF373 0.32 +0.9 404,022 + GFF373 0.32 -1.2 404,022 + GFF373 0.32 -0.2 404,022 + GFF373 0.32 +1.0 404,022 + GFF373 0.32 +0.5 404,022 + GFF373 0.32 -0.9 404,022 + GFF373 0.32 -2.4 404,022 + GFF373 0.32 -1.4 404,023 - GFF373 0.32 -0.7 404,023 - GFF373 0.32 -2.6 404,323 + -0.7 404,323 + +0.2 404,323 + -1.8 404,324 - -0.4 404,324 - -1.4 404,344 + -2.3 404,470 - GFF374 0.32 -1.8 404,470 - GFF374 0.32 -1.3 404,479 + GFF374 0.34 -1.9 404,479 + GFF374 0.34 -3.5 404,479 + GFF374 0.34 -1.4 404,650 + GFF374 0.70 -1.9 404,650 + GFF374 0.70 +0.2 404,651 - GFF374 0.70 -1.9 404,808 + +0.2 404,920 + +1.3 404,920 + -0.6 404,920 + +0.7 404,920 + +0.3 404,920 + -1.2 404,920 + +0.2 404,920 + +0.6 404,920 + +1.0 404,920 + +1.1 404,920 + -0.1 404,921 - +1.3 404,921 - +1.2 404,921 - -1.0 404,921 - -0.2 404,921 - -1.2 404,962 + GFF375 0.12 -1.6 404,962 + GFF375 0.12 -1.7 404,962 + GFF375 0.12 -1.7 404,962 + GFF375 0.12 -2.4 404,962 + GFF375 0.12 +1.5 404,962 + GFF375 0.12 +1.8 404,962 + GFF375 0.12 +1.8 404,962 + GFF375 0.12 +0.2 404,962 + GFF375 0.12 +1.1 404,962 + GFF375 0.12 -0.2 404,962 + GFF375 0.12 -0.6 404,962 + GFF375 0.12 -0.6 404,962 + GFF375 0.12 +0.5 404,962 + GFF375 0.12 -2.8 404,962 + GFF375 0.12 +0.3 404,962 + GFF375 0.12 -1.7 404,962 + GFF375 0.12 -0.2 404,962 + GFF375 0.12 +0.5 404,962 + GFF375 0.12 +1.6 404,962 + GFF375 0.12 -1.4 404,962 + GFF375 0.12 -2.5 404,962 + GFF375 0.12 -0.2 404,962 + GFF375 0.12 +1.1 404,962 + GFF375 0.12 +0.9 404,963 - GFF375 0.12 +1.6 404,963 - GFF375 0.12 +2.6 404,963 - GFF375 0.12 +1.1 404,963 - GFF375 0.12 -2.5 404,963 - GFF375 0.12 -1.2 404,963 - GFF375 0.12 +0.1 404,963 - GFF375 0.12 -1.2 404,963 - GFF375 0.12 -1.9 404,963 - GFF375 0.12 +1.1 404,963 - GFF375 0.12 +0.5 404,963 - GFF375 0.12 -0.2 404,963 - GFF375 0.12 +0.7 404,963 - GFF375 0.12 -1.6 404,963 - GFF375 0.12 -0.6 404,963 - GFF375 0.12 +2.1 404,963 - GFF375 0.12 -2.6 404,963 - GFF375 0.12 -2.3 404,963 - GFF375 0.12 -2.0 404,963 - GFF375 0.12 -0.2 404,963 - GFF375 0.12 +0.8 404,963 - GFF375 0.12 -0.2 404,963 - GFF375 0.12 +1.1 404,963 - GFF375 0.12 +0.1 404,963 - GFF375 0.12 +0.5 405,061 + GFF375 0.23 -2.1 405,061 + GFF375 0.23 -0.5 405,061 + GFF375 0.23 +1.2 405,062 - GFF375 0.23 -1.4 405,062 - GFF375 0.23 +1.5 405,112 + GFF375 0.29 -2.4 405,113 - GFF375 0.29 -0.0 405,175 + GFF375 0.36 -1.3 405,175 + GFF375 0.36 +0.3 405,175 + GFF375 0.36 +0.6 405,175 + GFF375 0.36 +0.4 405,176 - GFF375 0.36 -1.4 405,295 + GFF375 0.50 -2.6 405,295 + GFF375 0.50 +0.2 405,295 + GFF375 0.50 -1.0 405,295 + GFF375 0.50 +0.6 405,295 + GFF375 0.50 -2.0 405,295 + GFF375 0.50 +0.6 405,295 + GFF375 0.50 -1.8 405,296 - GFF375 0.50 -0.1 405,296 - GFF375 0.50 +1.8 405,296 - GFF375 0.50 -1.0 405,296 - GFF375 0.50 +1.4 405,296 - GFF375 0.50 -1.0 405,296 - GFF375 0.50 +2.1
Or see this region's nucleotide sequence