Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF362 and GFF363 are separated by 61 nucleotides GFF363 and GFF364 are separated by 18 nucleotides GFF364 and GFF365 are separated by 31 nucleotides
GFF362 - Enoyl-CoA hydratase (EC 4.2.1.17), at 392,992 to 393,771
GFF362
GFF363 - Transcriptional regulator, Crp/Fnr family, at 393,833 to 394,552
GFF363
GFF364 - acyl-CoA dehydrogenase, putative phosphotransferase, at 394,571 to 395,680
GFF364
GFF365 - Acyl-CoA dehydrogenase, at 395,712 to 396,983
GFF365
Position (kb) 394
395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 393.763 kb on + strand at 393.764 kb on - strand at 393.764 kb on - strand at 393.764 kb on - strand at 393.764 kb on - strand at 393.850 kb on + strand at 393.850 kb on + strand at 393.850 kb on + strand at 393.850 kb on + strand at 393.850 kb on + strand at 393.851 kb on - strand at 393.851 kb on - strand at 393.851 kb on - strand at 393.851 kb on - strand at 393.851 kb on - strand at 393.851 kb on - strand at 393.851 kb on - strand at 393.900 kb on + strand at 393.900 kb on + strand at 393.900 kb on + strand at 393.900 kb on + strand at 393.900 kb on + strand at 393.900 kb on + strand at 393.901 kb on - strand at 393.901 kb on - strand at 393.901 kb on - strand at 393.901 kb on - strand at 393.901 kb on - strand at 393.913 kb on - strand, within GFF363 at 393.950 kb on + strand, within GFF363 at 393.950 kb on + strand, within GFF363 at 393.950 kb on + strand, within GFF363 at 393.951 kb on - strand, within GFF363 at 393.951 kb on - strand, within GFF363 at 394.070 kb on + strand, within GFF363 at 394.070 kb on + strand, within GFF363 at 394.070 kb on + strand, within GFF363 at 394.070 kb on + strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.071 kb on - strand, within GFF363 at 394.139 kb on + strand, within GFF363 at 394.139 kb on + strand, within GFF363 at 394.139 kb on + strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.140 kb on - strand, within GFF363 at 394.217 kb on + strand, within GFF363 at 394.217 kb on + strand, within GFF363 at 394.217 kb on + strand, within GFF363 at 394.217 kb on + strand, within GFF363 at 394.217 kb on + strand, within GFF363 at 394.217 kb on + strand, within GFF363 at 394.218 kb on - strand, within GFF363 at 394.218 kb on - strand, within GFF363 at 394.218 kb on - strand, within GFF363 at 394.285 kb on + strand, within GFF363 at 394.285 kb on + strand, within GFF363 at 394.286 kb on - strand, within GFF363 at 394.340 kb on + strand, within GFF363 at 394.341 kb on - strand, within GFF363 at 394.341 kb on - strand, within GFF363 at 394.341 kb on - strand, within GFF363 at 394.341 kb on - strand, within GFF363 at 394.551 kb on - strand at 394.551 kb on - strand at 394.551 kb on - strand at 394.733 kb on + strand, within GFF364 at 394.733 kb on + strand, within GFF364 at 394.734 kb on - strand, within GFF364 at 394.734 kb on - strand, within GFF364 at 394.734 kb on - strand, within GFF364 at 394.734 kb on - strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.760 kb on + strand, within GFF364 at 394.761 kb on - strand, within GFF364 at 394.761 kb on - strand, within GFF364 at 394.761 kb on - strand, within GFF364 at 394.761 kb on - strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.880 kb on + strand, within GFF364 at 394.881 kb on - strand, within GFF364 at 394.881 kb on - strand, within GFF364 at 394.881 kb on - strand, within GFF364 at 394.881 kb on - strand, within GFF364 at 394.881 kb on - strand, within GFF364 at 394.881 kb on - strand, within GFF364 at 394.881 kb on - strand, within GFF364 at 394.922 kb on + strand, within GFF364 at 394.922 kb on + strand, within GFF364 at 394.922 kb on + strand, within GFF364 at 394.922 kb on + strand, within GFF364 at 394.922 kb on + strand, within GFF364 at 394.922 kb on + strand, within GFF364 at 394.922 kb on + strand, within GFF364 at 394.923 kb on - strand, within GFF364 at 394.923 kb on - strand, within GFF364 at 394.923 kb on - strand, within GFF364 at 394.923 kb on - strand, within GFF364 at 394.932 kb on - strand, within GFF364 at 395.004 kb on - strand, within GFF364 at 395.004 kb on - strand, within GFF364 at 395.090 kb on + strand, within GFF364 at 395.091 kb on - strand, within GFF364 at 395.126 kb on + strand, within GFF364 at 395.126 kb on + strand, within GFF364 at 395.126 kb on + strand, within GFF364 at 395.126 kb on + strand, within GFF364 at 395.126 kb on + strand, within GFF364 at 395.126 kb on + strand, within GFF364 at 395.126 kb on + strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.127 kb on - strand, within GFF364 at 395.363 kb on + strand, within GFF364 at 395.363 kb on + strand, within GFF364 at 395.363 kb on + strand, within GFF364 at 395.364 kb on - strand, within GFF364 at 395.364 kb on - strand, within GFF364 at 395.364 kb on - strand, within GFF364 at 395.364 kb on - strand, within GFF364 at 395.456 kb on + strand, within GFF364 at 395.456 kb on + strand, within GFF364 at 395.456 kb on + strand, within GFF364 at 395.456 kb on + strand, within GFF364 at 395.456 kb on + strand, within GFF364 at 395.456 kb on + strand, within GFF364 at 395.456 kb on + strand, within GFF364 at 395.457 kb on - strand, within GFF364 at 395.457 kb on - strand, within GFF364 at 395.457 kb on - strand, within GFF364 at 395.469 kb on - strand, within GFF364 at 395.525 kb on + strand, within GFF364 at 395.526 kb on - strand, within GFF364 at 395.526 kb on - strand, within GFF364 at 395.526 kb on - strand, within GFF364 at 395.526 kb on - strand, within GFF364 at 395.526 kb on - strand, within GFF364 at 395.534 kb on + strand, within GFF364 at 395.534 kb on + strand, within GFF364 at 395.534 kb on + strand, within GFF364 at 395.535 kb on - strand, within GFF364 at 395.535 kb on - strand, within GFF364 at 395.535 kb on - strand, within GFF364 at 395.535 kb on - strand, within GFF364 at 395.535 kb on - strand, within GFF364 at 395.725 kb on - strand at 395.725 kb on - strand at 395.725 kb on - strand at 395.784 kb on + strand at 395.785 kb on - strand at 395.785 kb on - strand at 395.785 kb on - strand at 395.785 kb on - strand at 395.785 kb on - strand at 395.785 kb on - strand at 395.802 kb on + strand at 395.802 kb on + strand at 395.802 kb on + strand at 395.803 kb on - strand at 395.803 kb on - strand at 395.803 kb on - strand at 395.943 kb on + strand, within GFF365 at 395.973 kb on + strand, within GFF365 at 395.974 kb on - strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.393 kb on + strand, within GFF365 at 396.394 kb on - strand, within GFF365 at 396.394 kb on - strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 393,763 + +0.5 393,764 - -0.6 393,764 - +1.2 393,764 - +1.6 393,764 - -1.0 393,850 + -1.1 393,850 + +1.0 393,850 + -1.0 393,850 + -0.5 393,850 + -1.6 393,851 - +1.9 393,851 - +1.8 393,851 - +1.6 393,851 - +1.5 393,851 - -2.2 393,851 - -2.2 393,851 - -1.2 393,900 + -0.0 393,900 + +0.2 393,900 + +1.2 393,900 + -1.4 393,900 + -1.8 393,900 + +1.1 393,901 - -0.2 393,901 - -1.4 393,901 - +0.0 393,901 - -0.6 393,901 - -1.2 393,913 - GFF363 0.11 -0.2 393,950 + GFF363 0.16 +1.1 393,950 + GFF363 0.16 -2.3 393,950 + GFF363 0.16 +1.2 393,951 - GFF363 0.16 -0.0 393,951 - GFF363 0.16 +0.5 394,070 + GFF363 0.33 +1.6 394,070 + GFF363 0.33 +0.9 394,070 + GFF363 0.33 -1.2 394,070 + GFF363 0.33 -1.2 394,071 - GFF363 0.33 +0.5 394,071 - GFF363 0.33 -2.0 394,071 - GFF363 0.33 -0.6 394,071 - GFF363 0.33 -3.1 394,071 - GFF363 0.33 +1.0 394,071 - GFF363 0.33 -2.6 394,071 - GFF363 0.33 +0.2 394,071 - GFF363 0.33 -2.8 394,139 + GFF363 0.42 -0.2 394,139 + GFF363 0.42 -0.7 394,139 + GFF363 0.42 +0.4 394,140 - GFF363 0.43 +0.8 394,140 - GFF363 0.43 -0.7 394,140 - GFF363 0.43 -1.0 394,140 - GFF363 0.43 +3.2 394,140 - GFF363 0.43 -0.5 394,140 - GFF363 0.43 -1.2 394,140 - GFF363 0.43 -0.3 394,140 - GFF363 0.43 -1.1 394,140 - GFF363 0.43 +0.7 394,217 + GFF363 0.53 +0.1 394,217 + GFF363 0.53 -0.1 394,217 + GFF363 0.53 +0.8 394,217 + GFF363 0.53 -2.5 394,217 + GFF363 0.53 -2.5 394,217 + GFF363 0.53 +1.2 394,218 - GFF363 0.53 -1.2 394,218 - GFF363 0.53 -3.1 394,218 - GFF363 0.53 +0.2 394,285 + GFF363 0.63 +1.5 394,285 + GFF363 0.63 +1.4 394,286 - GFF363 0.63 -2.0 394,340 + GFF363 0.70 +0.1 394,341 - GFF363 0.71 -2.8 394,341 - GFF363 0.71 -1.8 394,341 - GFF363 0.71 +0.7 394,341 - GFF363 0.71 -0.9 394,551 - -0.2 394,551 - +1.2 394,551 - +0.1 394,733 + GFF364 0.15 -1.6 394,733 + GFF364 0.15 +3.9 394,734 - GFF364 0.15 -0.6 394,734 - GFF364 0.15 -0.8 394,734 - GFF364 0.15 +0.2 394,734 - GFF364 0.15 -0.1 394,760 + GFF364 0.17 -1.0 394,760 + GFF364 0.17 -0.7 394,760 + GFF364 0.17 -0.6 394,760 + GFF364 0.17 -2.6 394,760 + GFF364 0.17 -4.3 394,760 + GFF364 0.17 -1.7 394,760 + GFF364 0.17 +0.6 394,760 + GFF364 0.17 -1.9 394,761 - GFF364 0.17 +0.8 394,761 - GFF364 0.17 -1.0 394,761 - GFF364 0.17 -0.9 394,761 - GFF364 0.17 -0.8 394,880 + GFF364 0.28 +0.4 394,880 + GFF364 0.28 -2.4 394,880 + GFF364 0.28 -3.9 394,880 + GFF364 0.28 -0.8 394,880 + GFF364 0.28 -2.3 394,880 + GFF364 0.28 -1.6 394,880 + GFF364 0.28 -2.1 394,880 + GFF364 0.28 -0.8 394,880 + GFF364 0.28 +1.2 394,881 - GFF364 0.28 -2.0 394,881 - GFF364 0.28 -2.4 394,881 - GFF364 0.28 -0.2 394,881 - GFF364 0.28 -0.6 394,881 - GFF364 0.28 -1.7 394,881 - GFF364 0.28 +0.4 394,881 - GFF364 0.28 +1.1 394,922 + GFF364 0.32 -0.6 394,922 + GFF364 0.32 +0.3 394,922 + GFF364 0.32 -1.3 394,922 + GFF364 0.32 +0.3 394,922 + GFF364 0.32 -1.0 394,922 + GFF364 0.32 +0.5 394,922 + GFF364 0.32 -1.0 394,923 - GFF364 0.32 +0.4 394,923 - GFF364 0.32 +1.1 394,923 - GFF364 0.32 -0.8 394,923 - GFF364 0.32 -2.0 394,932 - GFF364 0.33 +1.4 395,004 - GFF364 0.39 -1.0 395,004 - GFF364 0.39 -0.2 395,090 + GFF364 0.47 +0.8 395,091 - GFF364 0.47 -1.7 395,126 + GFF364 0.50 +1.1 395,126 + GFF364 0.50 -0.2 395,126 + GFF364 0.50 -0.6 395,126 + GFF364 0.50 -0.6 395,126 + GFF364 0.50 -1.2 395,126 + GFF364 0.50 +1.6 395,126 + GFF364 0.50 -0.8 395,127 - GFF364 0.50 +1.8 395,127 - GFF364 0.50 -1.9 395,127 - GFF364 0.50 -2.7 395,127 - GFF364 0.50 +0.4 395,127 - GFF364 0.50 +0.0 395,127 - GFF364 0.50 -3.1 395,127 - GFF364 0.50 +1.8 395,127 - GFF364 0.50 -2.9 395,127 - GFF364 0.50 +0.8 395,127 - GFF364 0.50 -1.6 395,127 - GFF364 0.50 -2.4 395,127 - GFF364 0.50 +1.5 395,363 + GFF364 0.71 +0.2 395,363 + GFF364 0.71 -0.2 395,363 + GFF364 0.71 -0.0 395,364 - GFF364 0.71 -0.8 395,364 - GFF364 0.71 +0.2 395,364 - GFF364 0.71 -1.0 395,364 - GFF364 0.71 -2.3 395,456 + GFF364 0.80 +0.2 395,456 + GFF364 0.80 +0.3 395,456 + GFF364 0.80 +0.2 395,456 + GFF364 0.80 -2.2 395,456 + GFF364 0.80 +0.1 395,456 + GFF364 0.80 -2.2 395,456 + GFF364 0.80 +1.3 395,457 - GFF364 0.80 -0.7 395,457 - GFF364 0.80 -2.1 395,457 - GFF364 0.80 -0.6 395,469 - GFF364 0.81 -1.4 395,525 + GFF364 0.86 -0.2 395,526 - GFF364 0.86 -1.2 395,526 - GFF364 0.86 -2.1 395,526 - GFF364 0.86 +0.3 395,526 - GFF364 0.86 -1.2 395,526 - GFF364 0.86 -1.7 395,534 + GFF364 0.87 -2.0 395,534 + GFF364 0.87 -0.7 395,534 + GFF364 0.87 +0.7 395,535 - GFF364 0.87 -0.6 395,535 - GFF364 0.87 -0.2 395,535 - GFF364 0.87 -0.8 395,535 - GFF364 0.87 -1.9 395,535 - GFF364 0.87 -0.3 395,725 - -0.6 395,725 - -0.7 395,725 - -2.1 395,784 + -1.8 395,785 - -1.0 395,785 - -0.5 395,785 - -0.4 395,785 - -0.8 395,785 - +0.2 395,785 - -1.9 395,802 + -1.2 395,802 + +2.6 395,802 + -0.1 395,803 - -0.7 395,803 - +1.8 395,803 - -2.2 395,943 + GFF365 0.18 +1.1 395,973 + GFF365 0.21 +0.6 395,974 - GFF365 0.21 -1.6 396,216 + GFF365 0.40 -2.0 396,216 + GFF365 0.40 -2.2 396,216 + GFF365 0.40 -1.0 396,216 + GFF365 0.40 -1.2 396,216 + GFF365 0.40 -1.1 396,216 + GFF365 0.40 +0.8 396,216 + GFF365 0.40 -2.0 396,216 + GFF365 0.40 +3.1 396,217 - GFF365 0.40 -0.6 396,217 - GFF365 0.40 -0.0 396,217 - GFF365 0.40 -1.7 396,217 - GFF365 0.40 -1.9 396,217 - GFF365 0.40 -2.9 396,393 + GFF365 0.54 -0.1 396,394 - GFF365 0.54 -0.1 396,394 - GFF365 0.54 -1.3 396,426 + GFF365 0.56 -0.5 396,426 + GFF365 0.56 -2.9 396,426 + GFF365 0.56 -1.7 396,426 + GFF365 0.56 -0.9 396,426 + GFF365 0.56 +0.8 396,427 - GFF365 0.56 -1.8 396,427 - GFF365 0.56 -1.1 396,427 - GFF365 0.56 -1.7 396,427 - GFF365 0.56 -2.5 396,427 - GFF365 0.56 -2.4
Or see this region's nucleotide sequence