Strain Fitness in Variovorax sp. SCN45 around GFF3545

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
48,331	+		GFF3543	0.79	-1.3
48,331	+		GFF3543	0.79	-0.2
48,331	+		GFF3543	0.79	-2.8
48,331	+		GFF3543	0.79	+0.4
48,332	-		GFF3543	0.80	-1.0
48,332	-		GFF3543	0.80	+0.6
48,332	-		GFF3543	0.80	-0.8
48,350	+		GFF3543	0.83	+1.4
48,374	+		GFF3543	0.87	-2.7
48,374	+		GFF3543	0.87	-2.6
48,374	+		GFF3543	0.87	+0.4
48,374	+		GFF3543	0.87	-2.9
48,375	-		GFF3543	0.87	+1.0
48,375	-		GFF3543	0.87	-1.6
48,375	-		GFF3543	0.87	-1.2
48,375	-		GFF3543	0.87	-1.1
48,465	+				+1.9
48,465	+				-1.2
48,465	+				-2.4
48,465	+				-1.6
48,465	+				-2.0
48,465	+				+0.1
48,465	+				-3.1
48,466	-				-2.5
48,466	-				-1.4
48,466	-				-1.0
48,466	-				+0.9
48,483	+				+0.9
48,483	+				-1.2
48,483	+				+1.3
48,483	+				-0.3
48,483	+				-2.6
48,483	+				-0.7
48,484	-				+0.3
48,484	-				+1.5
48,484	-				-0.2
48,687	+		GFF3544	0.39	+0.0
48,687	+		GFF3544	0.39	-1.4
48,687	+		GFF3544	0.39	-2.6
48,687	+		GFF3544	0.39	-0.7
48,687	+		GFF3544	0.39	+1.4
48,687	+		GFF3544	0.39	+0.4
48,688	-		GFF3544	0.40	-0.8
48,688	-		GFF3544	0.40	-0.3
48,966	+		GFF3544	0.85	-1.0
48,966	+		GFF3544	0.85	-1.5
48,972	+		GFF3544	0.86	-1.1
48,972	+		GFF3544	0.86	-1.2
48,973	-		GFF3544	0.86	-1.2
49,074	+				-0.9
49,369	+		GFF3545	0.12	-1.2
49,369	+		GFF3545	0.12	+1.4
49,369	+		GFF3545	0.12	-0.5
49,370	-		GFF3545	0.12	-3.2
49,432	+		GFF3545	0.14	-2.9
49,432	+		GFF3545	0.14	-1.1
49,433	-		GFF3545	0.14	-1.2
49,465	+		GFF3545	0.16	-1.0
49,465	+		GFF3545	0.16	-0.5
49,465	+		GFF3545	0.16	-0.5
49,466	-		GFF3545	0.16	+0.8
49,466	-		GFF3545	0.16	+0.4
49,466	-		GFF3545	0.16	-2.2
49,471	+		GFF3545	0.16	-3.1
49,471	+		GFF3545	0.16	-1.6
49,471	+		GFF3545	0.16	-1.7
49,471	+		GFF3545	0.16	+0.3
49,471	+		GFF3545	0.16	+0.8
49,471	+		GFF3545	0.16	-2.3
49,471	+		GFF3545	0.16	+0.8
49,471	+		GFF3545	0.16	-0.8
49,471	+		GFF3545	0.16	+0.4
49,471	+		GFF3545	0.16	+1.4
49,471	+		GFF3545	0.16	-1.0
49,471	+		GFF3545	0.16	-0.2
49,471	+		GFF3545	0.16	+0.8
49,471	+		GFF3545	0.16	-0.4
49,471	+		GFF3545	0.16	-1.8
49,471	+		GFF3545	0.16	+0.4
49,471	+		GFF3545	0.16	+1.4
49,471	+		GFF3545	0.16	+1.5
49,471	+		GFF3545	0.16	+0.2
49,471	+		GFF3545	0.16	-0.3
49,471	+		GFF3545	0.16	+1.0
49,472	-		GFF3545	0.16	+0.6
49,472	-		GFF3545	0.16	-0.6
49,472	-		GFF3545	0.16	-0.6
49,472	-		GFF3545	0.16	-0.2
49,472	-		GFF3545	0.16	-1.8
49,472	-		GFF3545	0.16	-1.5
49,472	-		GFF3545	0.16	-2.7
49,472	-		GFF3545	0.16	-1.6
49,472	-		GFF3545	0.16	+0.3
49,472	-		GFF3545	0.16	-0.1
49,472	-		GFF3545	0.16	+0.2
49,472	-		GFF3545	0.16	-0.8
49,472	-		GFF3545	0.16	-0.1
49,472	-		GFF3545	0.16	-0.8
49,472	-		GFF3545	0.16	+0.5
49,472	-		GFF3545	0.16	-0.7
49,472	-		GFF3545	0.16	-1.2
49,630	+		GFF3545	0.23	-1.4
49,630	+		GFF3545	0.23	-1.8
49,630	+		GFF3545	0.23	-2.3
49,630	+		GFF3545	0.23	+0.5
49,630	+		GFF3545	0.23	-1.0
49,630	+		GFF3545	0.23	+0.5
49,631	-		GFF3545	0.23	-2.1
49,631	-		GFF3545	0.23	-1.6
49,654	+		GFF3545	0.24	-0.2
49,654	+		GFF3545	0.24	+1.8
49,654	+		GFF3545	0.24	-2.1
49,654	+		GFF3545	0.24	+1.6
49,655	-		GFF3545	0.24	-1.6
49,655	-		GFF3545	0.24	-0.3
49,655	-		GFF3545	0.24	-1.9
49,655	-		GFF3545	0.24	+0.6
49,655	-		GFF3545	0.24	-3.6
49,655	-		GFF3545	0.24	-0.3
49,655	-		GFF3545	0.24	-0.3
49,723	+		GFF3545	0.27	-0.5
49,724	-		GFF3545	0.27	+0.9
49,724	-		GFF3545	0.27	-1.0
49,760	-		GFF3545	0.29	-2.0
49,933	+		GFF3545	0.36	-3.5
49,933	+		GFF3545	0.36	-1.1
49,933	+		GFF3545	0.36	+0.3
49,933	+		GFF3545	0.36	-0.0
49,933	+		GFF3545	0.36	-0.8
49,933	+		GFF3545	0.36	-1.5
49,933	+		GFF3545	0.36	-0.9
49,933	+		GFF3545	0.36	-0.3
49,934	-		GFF3545	0.36	+0.0
49,934	-		GFF3545	0.36	-0.6
49,934	-		GFF3545	0.36	-3.0
49,934	-		GFF3545	0.36	+2.8
49,948	+		GFF3545	0.37	+1.6
49,949	-		GFF3545	0.37	-1.2
50,071	+		GFF3545	0.42	-0.8
50,072	-		GFF3545	0.42	+1.8
50,072	-		GFF3545	0.42	+0.8
50,072	-		GFF3545	0.42	-1.1
50,072	-		GFF3545	0.42	+0.8
50,200	+		GFF3545	0.48	+1.4
50,200	+		GFF3545	0.48	+0.1
50,201	-		GFF3545	0.48	-1.1
50,242	+		GFF3545	0.50	+0.0
50,242	+		GFF3545	0.50	+0.8
50,243	-		GFF3545	0.50	-1.7
50,263	+		GFF3545	0.50	-0.3
50,263	+		GFF3545	0.50	+0.4
50,263	+		GFF3545	0.50	-0.6
50,284	+		GFF3545	0.51	+3.2
50,284	+		GFF3545	0.51	-1.6
50,284	+		GFF3545	0.51	-2.1
50,429	-		GFF3545	0.58	+0.4
50,494	+		GFF3545	0.60	+0.0
50,494	+		GFF3545	0.60	-1.1
50,494	+		GFF3545	0.60	-0.0
50,494	+		GFF3545	0.60	+1.0
50,494	+		GFF3545	0.60	+1.3
50,494	+		GFF3545	0.60	-2.6
50,494	+		GFF3545	0.60	-1.6
50,494	+		GFF3545	0.60	-0.8
50,495	-		GFF3545	0.61	-0.8
50,495	-		GFF3545	0.61	+1.7
50,495	-		GFF3545	0.61	-1.0
50,495	-		GFF3545	0.61	-1.1
50,495	-		GFF3545	0.61	+1.2
50,495	-		GFF3545	0.61	-3.3
50,497	+		GFF3545	0.61	-2.2
50,497	+		GFF3545	0.61	+0.0
50,497	+		GFF3545	0.61	-0.8
50,497	+		GFF3545	0.61	+1.4
50,497	+		GFF3545	0.61	+0.8
50,497	+		GFF3545	0.61	+2.5
50,498	-		GFF3545	0.61	-2.9
50,498	-		GFF3545	0.61	-0.8
50,498	-		GFF3545	0.61	-2.2
50,498	-		GFF3545	0.61	-0.1
50,498	-		GFF3545	0.61	+2.4
50,498	-		GFF3545	0.61	+0.5
50,498	-		GFF3545	0.61	-0.9
50,498	-		GFF3545	0.61	+0.2
50,498	-		GFF3545	0.61	+0.2
50,498	-		GFF3545	0.61	-2.4
50,498	-		GFF3545	0.61	+0.4
50,498	-		GFF3545	0.61	+0.4
50,500	+		GFF3545	0.61	-2.4
50,500	+		GFF3545	0.61	-1.2
50,500	+		GFF3545	0.61	+0.9
50,501	-		GFF3545	0.61	-0.5
50,501	-		GFF3545	0.61	-0.2
50,501	-		GFF3545	0.61	+0.1
50,501	-		GFF3545	0.61	-0.1
50,615	-		GFF3545	0.66	-0.8
50,728	+		GFF3545	0.71	+1.5
50,728	+		GFF3545	0.71	-0.8
50,728	+		GFF3545	0.71	-1.3
50,728	+		GFF3545	0.71	-2.6
50,728	+		GFF3545	0.71	+1.0
50,728	+		GFF3545	0.71	-1.6
50,729	-		GFF3545	0.71	-0.9
50,729	-		GFF3545	0.71	+0.6
50,729	-		GFF3545	0.71	+1.4
50,729	-		GFF3545	0.71	-3.2
50,729	-		GFF3545	0.71	-1.9
50,729	-		GFF3545	0.71	-0.3
50,761	+		GFF3545	0.72	-0.4
50,761	+		GFF3545	0.72	-0.0
50,761	+		GFF3545	0.72	-1.0
50,761	+		GFF3545	0.72	-1.6
50,761	+		GFF3545	0.72	-0.6
50,761	+		GFF3545	0.72	-1.6
50,761	+		GFF3545	0.72	-1.6
50,761	+		GFF3545	0.72	+1.4
50,761	+		GFF3545	0.72	+0.0
50,761	+		GFF3545	0.72	-1.0
50,761	+		GFF3545	0.72	+0.0
50,761	+		GFF3545	0.72	+0.0
50,762	-		GFF3545	0.72	-0.0
50,762	-		GFF3545	0.72	-2.2
50,762	-		GFF3545	0.72	-1.3
50,762	-		GFF3545	0.72	-1.3
50,762	-		GFF3545	0.72	-1.5
50,762	-		GFF3545	0.72	+1.4
50,762	-		GFF3545	0.72	-2.4
50,762	-		GFF3545	0.72	-0.1
50,762	-		GFF3545	0.72	+1.2
50,762	-		GFF3545	0.72	+0.8
50,762	-		GFF3545	0.72	+2.4
50,857	+		GFF3545	0.76	-0.3
50,857	+		GFF3545	0.76	+0.7
50,857	+		GFF3545	0.76	+0.5
50,857	+		GFF3545	0.76	+1.2
50,857	+		GFF3545	0.76	-2.1
50,858	-		GFF3545	0.76	-1.9
50,858	-		GFF3545	0.76	+0.1
50,941	+		GFF3545	0.80	-1.0
50,942	-		GFF3545	0.80	+0.8
50,942	-		GFF3545	0.80	+0.8
50,942	-		GFF3545	0.80	-1.7
50,942	-		GFF3545	0.80	-3.2
50,942	-		GFF3545	0.80	+0.1
50,948	-		GFF3545	0.80	-1.2
51,136	+		GFF3545	0.88	-2.0
51,136	+		GFF3545	0.88	+1.0
51,136	+		GFF3545	0.88	+0.3
51,464	+				-3.1
51,464	+				-1.2
51,464	+				-1.1
51,465	-				-0.8
51,465	-				-1.5
51,465	-				-2.1
51,482	+				+0.4
51,482	+				-0.6
51,482	+				-0.5
51,482	+				-1.0
51,482	+				-3.3
51,482	+				-1.4
51,482	+				-1.8
51,482	+				-2.2
51,482	+				+0.4
51,483	-				-2.3
51,483	-				+0.0
51,483	-				-1.0
51,483	-				-2.3
51,483	-				-0.2
51,483	-				-2.0
51,483	-				+0.8
51,483	-				+0.8
51,568	+		GFF3547	0.18	+1.3
51,568	+		GFF3547	0.18	-0.9
51,568	+		GFF3547	0.18	+0.7
51,568	+		GFF3547	0.18	-0.4
51,568	+		GFF3547	0.18	-1.1
51,569	-		GFF3547	0.19	-0.8
51,673	+				+1.4
51,674	-				-0.2
51,703	+				-2.0
51,704	-				-1.3
51,704	-				-0.6
51,726	-				+0.4
51,765	-				+0.0
51,776	+				+0.8
51,860	+				-2.3
51,860	+				-1.1
51,860	+				-2.5
51,860	+				-0.2
51,861	-				-1.2
51,861	-				-0.2
51,861	-				+1.4
51,861	-				-0.1
51,861	-				-0.6
51,861	-				-2.7
51,861	-				+2.4
51,998	+		GFF3546	0.15	+0.2
52,073	+		GFF3546	0.19	-2.8
52,073	+		GFF3546	0.19	-1.0
52,073	+		GFF3546	0.19	-2.5
52,073	+		GFF3546	0.19	-3.7
52,073	+		GFF3546	0.19	-2.7
52,073	+		GFF3546	0.19	-2.8
52,074	-		GFF3546	0.19	-1.7
52,074	-		GFF3546	0.19	-1.0
52,074	-		GFF3546	0.19	-3.4
52,074	-		GFF3546	0.19	-2.9
52,074	-		GFF3546	0.19	-1.8
52,074	-		GFF3546	0.19	-4.0
52,250	+		GFF3546	0.28	-3.6
52,250	+		GFF3546	0.28	-0.8
52,250	+		GFF3546	0.28	-2.1
52,250	+		GFF3546	0.28	+0.3
52,250	+		GFF3546	0.28	-1.5
52,251	-		GFF3546	0.28	-2.2
52,251	-		GFF3546	0.28	-2.9
52,251	-		GFF3546	0.28	-2.5
52,289	+		GFF3546	0.30	-0.2
52,289	+		GFF3546	0.30	-1.7
52,289	+		GFF3546	0.30	-0.8
52,289	+		GFF3546	0.30	+0.0
52,290	-		GFF3546	0.30	-0.7
52,290	-		GFF3546	0.30	-3.2
52,290	-		GFF3546	0.30	-1.4
52,290	-		GFF3546	0.30	-1.8
52,290	-		GFF3546	0.30	-2.4
52,290	-		GFF3546	0.30	-3.4