Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3525 and GFF3526 overlap by 4 nucleotides GFF3526 and GFF3527 overlap by 4 nucleotides GFF3527 and GFF3528 are separated by 73 nucleotides
GFF3525 - Protein tyrosine/serine phosphatase, at 31,581 to 32,117
GFF3525
GFF3526 - hypothetical protein, at 32,114 to 32,608
GFF3526
GFF3527 - UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase, at 32,605 to 33,750
GFF3527
GFF3528 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 33,824 to 35,269
GFF3528
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 31.654 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.753 kb on + strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 32.409 kb on + strand, within GFF3526 at 32.410 kb on - strand, within GFF3526 at 32.416 kb on - strand, within GFF3526 at 32.563 kb on - strand at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.990 kb on + strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 33.329 kb on + strand, within GFF3527 at 33.330 kb on - strand, within GFF3527 at 33.545 kb on + strand, within GFF3527 at 33.546 kb on - strand, within GFF3527 at 33.546 kb on - strand, within GFF3527 at 33.584 kb on + strand, within GFF3527 at 33.584 kb on + strand, within GFF3527 at 33.584 kb on + strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.596 kb on + strand, within GFF3527 at 33.596 kb on + strand, within GFF3527 at 33.773 kb on + strand at 33.773 kb on + strand at 33.774 kb on - strand at 33.825 kb on + strand at 33.825 kb on + strand at 33.825 kb on + strand at 34.062 kb on + strand, within GFF3528 at 34.063 kb on - strand, within GFF3528 at 34.063 kb on - strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.515 kb on + strand, within GFF3528 at 34.516 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.605 kb on + strand, within GFF3528
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 31,654 + GFF3525 0.14 -2.1 31,684 + GFF3525 0.19 +0.5 31,684 + GFF3525 0.19 -0.6 31,753 + GFF3525 0.32 +1.4 31,754 - GFF3525 0.32 -0.3 31,754 - GFF3525 0.32 -2.0 32,409 + GFF3526 0.60 +0.1 32,410 - GFF3526 0.60 +0.6 32,416 - GFF3526 0.61 +0.4 32,563 - -2.2 32,733 - GFF3527 0.11 -1.7 32,733 - GFF3527 0.11 -3.2 32,733 - GFF3527 0.11 +2.4 32,733 - GFF3527 0.11 -2.2 32,990 + GFF3527 0.34 +0.7 32,991 - GFF3527 0.34 -0.8 32,991 - GFF3527 0.34 +1.4 32,991 - GFF3527 0.34 +1.0 33,329 + GFF3527 0.63 -2.5 33,330 - GFF3527 0.63 +0.8 33,545 + GFF3527 0.82 -1.7 33,546 - GFF3527 0.82 -0.8 33,546 - GFF3527 0.82 +1.2 33,584 + GFF3527 0.85 +0.0 33,584 + GFF3527 0.85 -1.1 33,584 + GFF3527 0.85 +0.6 33,585 - GFF3527 0.86 -3.7 33,585 - GFF3527 0.86 +1.4 33,585 - GFF3527 0.86 -1.6 33,585 - GFF3527 0.86 -0.6 33,585 - GFF3527 0.86 +0.8 33,585 - GFF3527 0.86 -0.2 33,585 - GFF3527 0.86 +1.1 33,585 - GFF3527 0.86 -0.5 33,585 - GFF3527 0.86 +0.8 33,585 - GFF3527 0.86 -0.2 33,596 + GFF3527 0.86 -0.2 33,596 + GFF3527 0.86 +0.6 33,773 + -1.1 33,773 + -0.2 33,774 - +0.8 33,825 + +2.9 33,825 + +0.9 33,825 + +1.1 34,062 + GFF3528 0.16 -0.9 34,063 - GFF3528 0.17 -0.7 34,063 - GFF3528 0.17 +0.8 34,452 + GFF3528 0.43 -2.7 34,452 + GFF3528 0.43 +0.5 34,452 + GFF3528 0.43 +0.5 34,452 + GFF3528 0.43 -2.1 34,452 + GFF3528 0.43 -0.9 34,452 + GFF3528 0.43 -1.4 34,452 + GFF3528 0.43 -0.0 34,452 + GFF3528 0.43 -0.9 34,453 - GFF3528 0.43 -2.2 34,453 - GFF3528 0.43 -2.3 34,453 - GFF3528 0.43 -1.1 34,453 - GFF3528 0.43 -0.3 34,453 - GFF3528 0.43 +0.4 34,453 - GFF3528 0.43 +0.5 34,453 - GFF3528 0.43 -0.5 34,515 + GFF3528 0.48 -2.5 34,516 - GFF3528 0.48 -0.5 34,603 - GFF3528 0.54 -2.0 34,603 - GFF3528 0.54 +0.5 34,603 - GFF3528 0.54 -0.6 34,603 - GFF3528 0.54 -1.1 34,605 + GFF3528 0.54 -0.6
Or see this region's nucleotide sequence