Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3443 and GFF3444 overlap by 1 nucleotides GFF3444 and GFF3445 are separated by 64 nucleotides GFF3445 and GFF3446 are separated by 24 nucleotides
GFF3443 - hypothetical protein, at 265,585 to 267,348
GFF3443
GFF3444 - BUG/TctC family periplasmic protein, at 267,348 to 268,337
GFF3444
GFF3445 - Cupin 2, conserved barrel, at 268,402 to 268,761
GFF3445
GFF3446 - Quinone oxidoreductase (EC 1.6.5.5), at 268,786 to 269,793
GFF3446
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 266.436 kb on - strand, within GFF3443 at 266.436 kb on - strand, within GFF3443 at 266.594 kb on + strand, within GFF3443 at 266.594 kb on + strand, within GFF3443 at 266.594 kb on + strand, within GFF3443 at 266.595 kb on - strand, within GFF3443 at 266.595 kb on - strand, within GFF3443 at 266.595 kb on - strand, within GFF3443 at 266.743 kb on + strand, within GFF3443 at 266.743 kb on + strand, within GFF3443 at 266.756 kb on + strand, within GFF3443 at 266.756 kb on + strand, within GFF3443 at 266.771 kb on + strand, within GFF3443 at 266.771 kb on + strand, within GFF3443 at 266.771 kb on + strand, within GFF3443 at 266.771 kb on + strand, within GFF3443 at 266.772 kb on - strand, within GFF3443 at 266.772 kb on - strand, within GFF3443 at 266.772 kb on - strand, within GFF3443 at 266.772 kb on - strand, within GFF3443 at 266.963 kb on + strand, within GFF3443 at 267.577 kb on + strand, within GFF3444 at 267.577 kb on + strand, within GFF3444 at 267.578 kb on - strand, within GFF3444 at 267.578 kb on - strand, within GFF3444 at 267.856 kb on + strand, within GFF3444 at 267.856 kb on + strand, within GFF3444 at 267.856 kb on + strand, within GFF3444 at 267.857 kb on - strand, within GFF3444 at 267.857 kb on - strand, within GFF3444 at 267.992 kb on - strand, within GFF3444 at 268.007 kb on - strand, within GFF3444 at 268.054 kb on + strand, within GFF3444 at 268.508 kb on + strand, within GFF3445 at 268.584 kb on - strand, within GFF3445 at 269.091 kb on - strand, within GFF3446 at 269.091 kb on - strand, within GFF3446 at 269.111 kb on + strand, within GFF3446 at 269.139 kb on + strand, within GFF3446
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 266,436 - GFF3443 0.48 +1.0 266,436 - GFF3443 0.48 -0.2 266,594 + GFF3443 0.57 -2.6 266,594 + GFF3443 0.57 -1.7 266,594 + GFF3443 0.57 -0.7 266,595 - GFF3443 0.57 -2.5 266,595 - GFF3443 0.57 +0.5 266,595 - GFF3443 0.57 +0.3 266,743 + GFF3443 0.66 +0.9 266,743 + GFF3443 0.66 +0.2 266,756 + GFF3443 0.66 +0.9 266,756 + GFF3443 0.66 +0.6 266,771 + GFF3443 0.67 +1.5 266,771 + GFF3443 0.67 +0.8 266,771 + GFF3443 0.67 -1.8 266,771 + GFF3443 0.67 -3.5 266,772 - GFF3443 0.67 +0.1 266,772 - GFF3443 0.67 +0.7 266,772 - GFF3443 0.67 -0.5 266,772 - GFF3443 0.67 -1.0 266,963 + GFF3443 0.78 +0.7 267,577 + GFF3444 0.23 +3.0 267,577 + GFF3444 0.23 -1.5 267,578 - GFF3444 0.23 -1.2 267,578 - GFF3444 0.23 -2.8 267,856 + GFF3444 0.51 -1.4 267,856 + GFF3444 0.51 -2.2 267,856 + GFF3444 0.51 +1.3 267,857 - GFF3444 0.51 -2.0 267,857 - GFF3444 0.51 +0.2 267,992 - GFF3444 0.65 +1.1 268,007 - GFF3444 0.67 +0.5 268,054 + GFF3444 0.71 -2.7 268,508 + GFF3445 0.29 -0.7 268,584 - GFF3445 0.51 -1.8 269,091 - GFF3446 0.30 +0.4 269,091 - GFF3446 0.30 +0.6 269,111 + GFF3446 0.32 -0.4 269,139 + GFF3446 0.35 +0.4
Or see this region's nucleotide sequence