Strain Fitness in Variovorax sp. SCN45 around GFF3432

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3431 and GFF3432 are separated by 121 nucleotidesGFF3432 and GFF3433 are separated by 13 nucleotidesGFF3433 and GFF3434 are separated by 188 nucleotides GFF3431 - Glutaryl-CoA dehydrogenase (EC 1.3.8.6), at 254,330 to 255,529 GFF3431 GFF3432 - L-carnitine dehydratase/bile acid-inducible protein F, at 255,651 to 256,889 GFF3432 GFF3433 - hypothetical protein, at 256,903 to 257,334 GFF3433 GFF3434 - Organic hydroperoxide resistance protein, at 257,523 to 257,936 GFF3434 Position (kb) 255 256 257Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 255.161 kb on + strand, within GFF3431at 255.162 kb on - strand, within GFF3431at 255.162 kb on - strand, within GFF3431at 255.455 kb on + strandat 255.455 kb on + strandat 255.455 kb on + strandat 255.455 kb on + strandat 255.456 kb on - strandat 255.456 kb on - strandat 255.456 kb on - strandat 255.456 kb on - strandat 255.527 kb on + strandat 255.528 kb on - strandat 255.528 kb on - strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.540 kb on + strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.541 kb on - strandat 255.553 kb on + strandat 255.553 kb on + strandat 255.554 kb on - strandat 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.855 kb on + strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.856 kb on - strand, within GFF3432at 255.993 kb on + strand, within GFF3432at 255.993 kb on + strand, within GFF3432at 255.994 kb on - strand, within GFF3432at 255.994 kb on - strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.041 kb on + strand, within GFF3432at 256.042 kb on - strand, within GFF3432at 256.042 kb on - strand, within GFF3432at 256.215 kb on + strand, within GFF3432at 256.215 kb on + strand, within GFF3432at 256.216 kb on - strand, within GFF3432at 256.395 kb on + strand, within GFF3432at 256.993 kb on + strand, within GFF3433at 257.279 kb on - strand, within GFF3433at 257.279 kb on - strand, within GFF3433at 257.279 kb on - strand, within GFF3433at 257.279 kb on - strand, within GFF3433at 257.333 kb on - strandat 257.370 kb on + strandat 257.370 kb on + strandat 257.371 kb on - strandat 257.371 kb on - strandat 257.371 kb on - strandat 257.399 kb on + strandat 257.399 kb on + strandat 257.399 kb on + strandat 257.399 kb on + strandat 257.399 kb on + strandat 257.399 kb on + strandat 257.399 kb on + strandat 257.399 kb on + strandat 257.400 kb on - strandat 257.400 kb on - strandat 257.442 kb on + strandat 257.442 kb on + strandat 257.457 kb on + strandat 257.457 kb on + strandat 257.458 kb on - strandat 257.458 kb on - strandat 257.544 kb on + strandat 257.544 kb on + strandat 257.545 kb on - strandat 257.793 kb on + strand, within GFF3434at 257.793 kb on + strand, within GFF3434at 257.793 kb on + strand, within GFF3434at 257.794 kb on - strand, within GFF3434at 257.794 kb on - strand, within GFF3434at 257.794 kb on - strand, within GFF3434at 257.886 kb on + strand, within GFF3434at 257.887 kb on - strand, within GFF3434at 257.887 kb on - strand, within GFF3434at 257.887 kb on - strand, within GFF3434

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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255,161 + GFF3431 0.69 -1.6
255,162 - GFF3431 0.69 -0.3
255,162 - GFF3431 0.69 -1.0
255,455 + +0.6
255,455 + -0.5
255,455 + -2.0
255,455 + -0.5
255,456 - -1.7
255,456 - -1.9
255,456 - -1.5
255,456 - -0.7
255,527 + +0.9
255,528 - +0.2
255,528 - -1.2
255,540 + +0.3
255,540 + -0.5
255,540 + -2.0
255,540 + -1.2
255,540 + -0.1
255,540 + +1.2
255,541 - +1.3
255,541 - +0.4
255,541 - +0.3
255,541 - -0.1
255,541 - +1.5
255,553 + -1.1
255,553 + -0.9
255,554 - -1.3
255,855 + GFF3432 0.16 -1.8
255,855 + GFF3432 0.16 +0.9
255,855 + GFF3432 0.16 -0.7
255,855 + GFF3432 0.16 -0.8
255,855 + GFF3432 0.16 +1.5
255,856 - GFF3432 0.17 +1.6
255,856 - GFF3432 0.17 +0.5
255,856 - GFF3432 0.17 -1.4
255,856 - GFF3432 0.17 +1.8
255,856 - GFF3432 0.17 -2.3
255,993 + GFF3432 0.28 -0.5
255,993 + GFF3432 0.28 -1.8
255,994 - GFF3432 0.28 +1.4
255,994 - GFF3432 0.28 -3.0
256,041 + GFF3432 0.31 +0.9
256,041 + GFF3432 0.31 -3.0
256,041 + GFF3432 0.31 -0.2
256,041 + GFF3432 0.31 -1.5
256,041 + GFF3432 0.31 +1.3
256,042 - GFF3432 0.32 +1.4
256,042 - GFF3432 0.32 -0.4
256,215 + GFF3432 0.46 +0.9
256,215 + GFF3432 0.46 -1.2
256,216 - GFF3432 0.46 +0.2
256,395 + GFF3432 0.60 +2.3
256,993 + GFF3433 0.21 -0.9
257,279 - GFF3433 0.87 -1.3
257,279 - GFF3433 0.87 -0.0
257,279 - GFF3433 0.87 -0.3
257,279 - GFF3433 0.87 +0.8
257,333 - -1.7
257,370 + -0.5
257,370 + +2.5
257,371 - +0.2
257,371 - +0.5
257,371 - -1.5
257,399 + -0.8
257,399 + +1.6
257,399 + -1.1
257,399 + +0.2
257,399 + -3.8
257,399 + -0.7
257,399 + +3.9
257,399 + +0.2
257,400 - +0.7
257,400 - -1.3
257,442 + +2.5
257,442 + +2.8
257,457 + -0.8
257,457 + +0.5
257,458 - +0.2
257,458 - -1.5
257,544 + -0.7
257,544 + -0.7
257,545 - -1.7
257,793 + GFF3434 0.65 +0.7
257,793 + GFF3434 0.65 -0.0
257,793 + GFF3434 0.65 +1.3
257,794 - GFF3434 0.65 -2.1
257,794 - GFF3434 0.65 +1.4
257,794 - GFF3434 0.65 +0.5
257,886 + GFF3434 0.88 -1.7
257,887 - GFF3434 0.88 -1.7
257,887 - GFF3434 0.88 -1.8
257,887 - GFF3434 0.88 -2.3

Or see this region's nucleotide sequence