Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3410 and GFF3411 are separated by 51 nucleotides GFF3411 and GFF3412 are separated by 593 nucleotides
GFF3410 - Transcriptional regulator, AraC family, at 233,653 to 234,780
GFF3410
GFF3411 - hypothetical protein, at 234,832 to 235,839
GFF3411
GFF3412 - Rrf2 family transcriptional regulator, group III, at 236,433 to 236,894
GFF3412
Position (kb) 234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 233.894 kb on + strand, within GFF3410 at 234.257 kb on + strand, within GFF3410 at 234.310 kb on + strand, within GFF3410 at 234.310 kb on + strand, within GFF3410 at 234.310 kb on + strand, within GFF3410 at 234.311 kb on - strand, within GFF3410 at 234.311 kb on - strand, within GFF3410 at 234.817 kb on - strand at 234.833 kb on + strand at 234.833 kb on + strand at 234.834 kb on - strand at 234.834 kb on - strand at 234.834 kb on - strand at 234.834 kb on - strand at 234.835 kb on + strand at 234.835 kb on + strand at 234.836 kb on - strand at 234.836 kb on - strand at 234.836 kb on - strand at 234.836 kb on - strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.853 kb on + strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.854 kb on - strand at 234.864 kb on + strand at 234.892 kb on + strand at 234.893 kb on - strand at 234.893 kb on - strand at 234.893 kb on - strand at 234.901 kb on + strand at 234.901 kb on + strand at 234.901 kb on + strand at 234.901 kb on + strand at 234.902 kb on - strand at 234.902 kb on - strand at 234.910 kb on + strand at 234.910 kb on + strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.944 kb on + strand, within GFF3411 at 234.945 kb on - strand, within GFF3411 at 234.960 kb on + strand, within GFF3411 at 235.018 kb on + strand, within GFF3411 at 235.030 kb on + strand, within GFF3411 at 235.030 kb on + strand, within GFF3411 at 235.030 kb on + strand, within GFF3411 at 235.031 kb on - strand, within GFF3411 at 235.031 kb on - strand, within GFF3411 at 235.031 kb on - strand, within GFF3411 at 235.031 kb on - strand, within GFF3411 at 235.047 kb on - strand, within GFF3411 at 235.047 kb on - strand, within GFF3411 at 235.060 kb on + strand, within GFF3411 at 235.060 kb on + strand, within GFF3411 at 235.061 kb on - strand, within GFF3411 at 235.061 kb on - strand, within GFF3411 at 235.061 kb on - strand, within GFF3411 at 235.061 kb on - strand, within GFF3411 at 235.081 kb on + strand, within GFF3411 at 235.081 kb on + strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.082 kb on - strand, within GFF3411 at 235.093 kb on + strand, within GFF3411 at 235.093 kb on + strand, within GFF3411 at 235.115 kb on + strand, within GFF3411 at 235.116 kb on - strand, within GFF3411 at 235.116 kb on - strand, within GFF3411 at 235.133 kb on + strand, within GFF3411 at 235.134 kb on - strand, within GFF3411 at 235.210 kb on + strand, within GFF3411 at 235.210 kb on + strand, within GFF3411 at 235.210 kb on + strand, within GFF3411 at 235.211 kb on - strand, within GFF3411 at 235.211 kb on - strand, within GFF3411 at 235.211 kb on - strand, within GFF3411 at 235.224 kb on - strand, within GFF3411 at 235.224 kb on - strand, within GFF3411 at 235.226 kb on + strand, within GFF3411 at 235.226 kb on + strand, within GFF3411 at 235.226 kb on + strand, within GFF3411 at 235.226 kb on + strand, within GFF3411 at 235.226 kb on + strand, within GFF3411 at 235.227 kb on - strand, within GFF3411 at 235.227 kb on - strand, within GFF3411 at 235.227 kb on - strand, within GFF3411 at 235.227 kb on - strand, within GFF3411 at 235.227 kb on - strand, within GFF3411 at 235.227 kb on - strand, within GFF3411 at 235.230 kb on + strand, within GFF3411 at 235.231 kb on - strand, within GFF3411 at 235.231 kb on - strand, within GFF3411 at 235.244 kb on + strand, within GFF3411 at 235.245 kb on - strand, within GFF3411 at 235.245 kb on - strand, within GFF3411 at 235.439 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.505 kb on + strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.506 kb on - strand, within GFF3411 at 235.535 kb on + strand, within GFF3411 at 235.535 kb on + strand, within GFF3411 at 235.535 kb on + strand, within GFF3411 at 235.535 kb on + strand, within GFF3411 at 235.535 kb on + strand, within GFF3411 at 235.536 kb on - strand, within GFF3411 at 235.536 kb on - strand, within GFF3411 at 235.536 kb on - strand, within GFF3411 at 235.536 kb on - strand, within GFF3411 at 235.536 kb on - strand, within GFF3411 at 235.568 kb on + strand, within GFF3411 at 235.568 kb on + strand, within GFF3411 at 235.568 kb on + strand, within GFF3411 at 235.569 kb on - strand, within GFF3411 at 235.569 kb on - strand, within GFF3411 at 235.569 kb on - strand, within GFF3411 at 235.589 kb on + strand, within GFF3411 at 235.655 kb on + strand, within GFF3411 at 235.655 kb on + strand, within GFF3411 at 235.655 kb on + strand, within GFF3411 at 235.655 kb on + strand, within GFF3411 at 235.656 kb on - strand, within GFF3411 at 235.656 kb on - strand, within GFF3411 at 235.656 kb on - strand, within GFF3411 at 235.742 kb on + strand at 235.743 kb on - strand at 235.767 kb on - strand at 235.779 kb on + strand at 235.800 kb on + strand at 235.800 kb on + strand at 235.819 kb on + strand at 235.947 kb on + strand at 235.947 kb on + strand at 235.961 kb on + strand at 235.961 kb on + strand at 235.961 kb on + strand at 235.961 kb on + strand at 235.962 kb on - strand at 235.997 kb on + strand at 235.997 kb on + strand at 235.998 kb on - strand at 236.101 kb on + strand at 236.134 kb on + strand at 236.135 kb on - strand at 236.135 kb on - strand at 236.151 kb on - strand at 236.277 kb on + strand at 236.278 kb on - strand at 236.278 kb on - strand at 236.288 kb on - strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.308 kb on + strand at 236.309 kb on - strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.314 kb on + strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.328 kb on + strand at 236.328 kb on + strand at 236.535 kb on - strand, within GFF3412 at 236.535 kb on - strand, within GFF3412
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 233,894 + GFF3410 0.21 +0.7 234,257 + GFF3410 0.54 +0.6 234,310 + GFF3410 0.58 -0.1 234,310 + GFF3410 0.58 +0.9 234,310 + GFF3410 0.58 -1.6 234,311 - GFF3410 0.58 +0.2 234,311 - GFF3410 0.58 -0.1 234,817 - +1.1 234,833 + +0.7 234,833 + -1.4 234,834 - +1.8 234,834 - -2.5 234,834 - +0.7 234,834 - +0.7 234,835 + -0.1 234,835 + +2.4 234,836 - +1.2 234,836 - -0.1 234,836 - +2.5 234,836 - +0.2 234,853 + -2.4 234,853 + -0.3 234,853 + -0.3 234,853 + +0.3 234,853 + -2.2 234,853 + -2.2 234,853 + -1.6 234,853 + -0.9 234,853 + +0.1 234,853 + -1.0 234,853 + -1.2 234,853 + -0.7 234,853 + +1.1 234,853 + -3.1 234,853 + -0.5 234,854 - -1.5 234,854 - -1.6 234,854 - -1.5 234,854 - -2.4 234,854 - +0.5 234,854 - -1.0 234,854 - -1.0 234,854 - -0.4 234,854 - +0.4 234,854 - -1.4 234,854 - -0.1 234,864 + -0.5 234,892 + -0.8 234,893 - -0.1 234,893 - -2.2 234,893 - +1.0 234,901 + +1.0 234,901 + +1.1 234,901 + -0.8 234,901 + +0.1 234,902 - -1.2 234,902 - -0.6 234,910 + -1.5 234,910 + +1.5 234,911 - +0.8 234,911 - -0.0 234,944 + GFF3411 0.11 -0.2 234,945 - GFF3411 0.11 +1.0 234,960 + GFF3411 0.13 -1.9 235,018 + GFF3411 0.18 +2.7 235,030 + GFF3411 0.20 -1.3 235,030 + GFF3411 0.20 -0.9 235,030 + GFF3411 0.20 +0.2 235,031 - GFF3411 0.20 -0.4 235,031 - GFF3411 0.20 +1.3 235,031 - GFF3411 0.20 -1.1 235,031 - GFF3411 0.20 -0.7 235,047 - GFF3411 0.21 +0.5 235,047 - GFF3411 0.21 -2.2 235,060 + GFF3411 0.23 +0.2 235,060 + GFF3411 0.23 -0.9 235,061 - GFF3411 0.23 -0.8 235,061 - GFF3411 0.23 +0.6 235,061 - GFF3411 0.23 +2.5 235,061 - GFF3411 0.23 +0.6 235,081 + GFF3411 0.25 +0.9 235,081 + GFF3411 0.25 +0.4 235,082 - GFF3411 0.25 -0.9 235,082 - GFF3411 0.25 +0.2 235,082 - GFF3411 0.25 -3.6 235,082 - GFF3411 0.25 +2.2 235,082 - GFF3411 0.25 -0.6 235,082 - GFF3411 0.25 -1.8 235,082 - GFF3411 0.25 +0.2 235,082 - GFF3411 0.25 -0.1 235,082 - GFF3411 0.25 +0.7 235,082 - GFF3411 0.25 +0.1 235,093 + GFF3411 0.26 -2.4 235,093 + GFF3411 0.26 -0.4 235,115 + GFF3411 0.28 -0.7 235,116 - GFF3411 0.28 -1.4 235,116 - GFF3411 0.28 +0.2 235,133 + GFF3411 0.30 -1.0 235,134 - GFF3411 0.30 +1.7 235,210 + GFF3411 0.38 -0.1 235,210 + GFF3411 0.38 -0.3 235,210 + GFF3411 0.38 -1.0 235,211 - GFF3411 0.38 -0.2 235,211 - GFF3411 0.38 -0.1 235,211 - GFF3411 0.38 -0.4 235,224 - GFF3411 0.39 -0.9 235,224 - GFF3411 0.39 -1.1 235,226 + GFF3411 0.39 +0.3 235,226 + GFF3411 0.39 -1.2 235,226 + GFF3411 0.39 -2.5 235,226 + GFF3411 0.39 -3.3 235,226 + GFF3411 0.39 +0.6 235,227 - GFF3411 0.39 +0.5 235,227 - GFF3411 0.39 +0.2 235,227 - GFF3411 0.39 -0.1 235,227 - GFF3411 0.39 -0.1 235,227 - GFF3411 0.39 -1.6 235,227 - GFF3411 0.39 -0.5 235,230 + GFF3411 0.39 -2.1 235,231 - GFF3411 0.40 -1.8 235,231 - GFF3411 0.40 -2.5 235,244 + GFF3411 0.41 -1.3 235,245 - GFF3411 0.41 +2.9 235,245 - GFF3411 0.41 -1.2 235,439 + GFF3411 0.60 +0.9 235,505 + GFF3411 0.67 +0.2 235,505 + GFF3411 0.67 +0.9 235,505 + GFF3411 0.67 -0.5 235,505 + GFF3411 0.67 +1.7 235,505 + GFF3411 0.67 +0.1 235,505 + GFF3411 0.67 +0.6 235,505 + GFF3411 0.67 +0.4 235,505 + GFF3411 0.67 -1.6 235,505 + GFF3411 0.67 +0.2 235,505 + GFF3411 0.67 +0.5 235,505 + GFF3411 0.67 -1.8 235,505 + GFF3411 0.67 +1.7 235,506 - GFF3411 0.67 +2.3 235,506 - GFF3411 0.67 -0.3 235,506 - GFF3411 0.67 -3.5 235,506 - GFF3411 0.67 +1.7 235,506 - GFF3411 0.67 -1.8 235,506 - GFF3411 0.67 -0.7 235,506 - GFF3411 0.67 +1.5 235,506 - GFF3411 0.67 -1.6 235,506 - GFF3411 0.67 -0.3 235,506 - GFF3411 0.67 +0.9 235,506 - GFF3411 0.67 +0.2 235,506 - GFF3411 0.67 -0.0 235,506 - GFF3411 0.67 -0.7 235,506 - GFF3411 0.67 -1.8 235,535 + GFF3411 0.70 -1.8 235,535 + GFF3411 0.70 +1.5 235,535 + GFF3411 0.70 -0.2 235,535 + GFF3411 0.70 +1.0 235,535 + GFF3411 0.70 +0.1 235,536 - GFF3411 0.70 +0.8 235,536 - GFF3411 0.70 +0.5 235,536 - GFF3411 0.70 +1.0 235,536 - GFF3411 0.70 -0.4 235,536 - GFF3411 0.70 +0.9 235,568 + GFF3411 0.73 +0.5 235,568 + GFF3411 0.73 -1.5 235,568 + GFF3411 0.73 -2.8 235,569 - GFF3411 0.73 -1.2 235,569 - GFF3411 0.73 -1.0 235,569 - GFF3411 0.73 -0.3 235,589 + GFF3411 0.75 +1.3 235,655 + GFF3411 0.82 -1.4 235,655 + GFF3411 0.82 +2.5 235,655 + GFF3411 0.82 -0.9 235,655 + GFF3411 0.82 -1.0 235,656 - GFF3411 0.82 -0.4 235,656 - GFF3411 0.82 -0.6 235,656 - GFF3411 0.82 +0.9 235,742 + -1.3 235,743 - -0.6 235,767 - +2.5 235,779 + -1.8 235,800 + +0.6 235,800 + -1.1 235,819 + -1.5 235,947 + -0.6 235,947 + +0.2 235,961 + +0.2 235,961 + +0.9 235,961 + -0.2 235,961 + -0.1 235,962 - -2.0 235,997 + -0.1 235,997 + +0.0 235,998 - +0.5 236,101 + -0.8 236,134 + +0.9 236,135 - -2.1 236,135 - -0.5 236,151 - +0.1 236,277 + -0.8 236,278 - -0.0 236,278 - +2.1 236,288 - -1.2 236,308 + +0.3 236,308 + +0.5 236,308 + +2.5 236,308 + -3.7 236,308 + -2.2 236,309 - +1.0 236,314 + +0.6 236,314 + +1.5 236,314 + +0.9 236,314 + +1.2 236,314 + -1.0 236,315 - +0.3 236,315 - +1.2 236,315 - -0.0 236,315 - -0.5 236,315 - -0.1 236,315 - +0.9 236,328 + +0.9 236,328 + -1.5 236,535 - GFF3412 0.22 -1.6 236,535 - GFF3412 0.22 -1.2
Or see this region's nucleotide sequence