Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3373 and GFF3374 are separated by 21 nucleotides GFF3374 and GFF3375 overlap by 4 nucleotides GFF3375 and GFF3376 are separated by 30 nucleotides
GFF3373 - Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34), at 192,941 to 194,230
GFF3373
GFF3374 - no description, at 194,252 to 194,371
GFF3374
GFF3375 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 194,368 to 195,756
GFF3375
GFF3376 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 195,787 to 197,343
GFF3376
Position (kb) 194
195
196 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 193.476 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.477 kb on - strand, within GFF3373 at 193.858 kb on - strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.008 kb on - strand, within GFF3373 at 194.274 kb on + strand, within GFF3374 at 194.274 kb on + strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.483 kb on - strand at 194.740 kb on + strand, within GFF3375 at 194.740 kb on + strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 195.175 kb on + strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.271 kb on + strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.394 kb on + strand, within GFF3375 at 195.394 kb on + strand, within GFF3375 at 195.395 kb on - strand, within GFF3375 at 195.436 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.551 kb on - strand, within GFF3375 at 195.884 kb on + strand at 195.884 kb on + strand at 195.885 kb on - strand at 196.061 kb on + strand, within GFF3376 at 196.062 kb on - strand, within GFF3376 at 196.070 kb on + strand, within GFF3376 at 196.071 kb on - strand, within GFF3376 at 196.205 kb on + strand, within GFF3376 at 196.205 kb on + strand, within GFF3376 at 196.205 kb on + strand, within GFF3376 at 196.206 kb on - strand, within GFF3376 at 196.206 kb on - strand, within GFF3376 at 196.208 kb on + strand, within GFF3376 at 196.209 kb on - strand, within GFF3376 at 196.397 kb on + strand, within GFF3376 at 196.397 kb on + strand, within GFF3376 at 196.397 kb on + strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.400 kb on + strand, within GFF3376 at 196.400 kb on + strand, within GFF3376 at 196.400 kb on + strand, within GFF3376 at 196.401 kb on - strand, within GFF3376 at 196.475 kb on + strand, within GFF3376 at 196.485 kb on - strand, within GFF3376 at 196.660 kb on + strand, within GFF3376 at 196.660 kb on + strand, within GFF3376
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 193,476 + GFF3373 0.41 -0.2 193,476 + GFF3373 0.41 +0.5 193,477 - GFF3373 0.42 +0.4 193,858 - GFF3373 0.71 +0.2 194,007 + GFF3373 0.83 +0.7 194,007 + GFF3373 0.83 -0.4 194,008 - GFF3373 0.83 -0.1 194,274 + GFF3374 0.18 -4.1 194,274 + GFF3374 0.18 -1.5 194,275 - GFF3374 0.19 -0.8 194,275 - GFF3374 0.19 +0.9 194,483 - +0.2 194,740 + GFF3375 0.27 +0.3 194,740 + GFF3375 0.27 -1.9 194,741 - GFF3375 0.27 +0.0 194,741 - GFF3375 0.27 -1.6 194,741 - GFF3375 0.27 -0.8 195,175 + GFF3375 0.58 +0.2 195,176 - GFF3375 0.58 +1.3 195,176 - GFF3375 0.58 +0.2 195,271 + GFF3375 0.65 +2.3 195,272 - GFF3375 0.65 -0.3 195,272 - GFF3375 0.65 -0.7 195,272 - GFF3375 0.65 -2.5 195,272 - GFF3375 0.65 +0.7 195,394 + GFF3375 0.74 -0.9 195,394 + GFF3375 0.74 -1.4 195,395 - GFF3375 0.74 +0.5 195,436 + GFF3375 0.77 -1.4 195,550 + GFF3375 0.85 -0.4 195,550 + GFF3375 0.85 +1.9 195,550 + GFF3375 0.85 +1.7 195,550 + GFF3375 0.85 -0.4 195,550 + GFF3375 0.85 -0.1 195,550 + GFF3375 0.85 +2.8 195,551 - GFF3375 0.85 +0.1 195,884 + +0.7 195,884 + +0.8 195,885 - +0.5 196,061 + GFF3376 0.18 +0.9 196,062 - GFF3376 0.18 +0.1 196,070 + GFF3376 0.18 -2.7 196,071 - GFF3376 0.18 +2.7 196,205 + GFF3376 0.27 -0.1 196,205 + GFF3376 0.27 -1.3 196,205 + GFF3376 0.27 +0.5 196,206 - GFF3376 0.27 -1.6 196,206 - GFF3376 0.27 +2.2 196,208 + GFF3376 0.27 -0.2 196,209 - GFF3376 0.27 -2.0 196,397 + GFF3376 0.39 -0.9 196,397 + GFF3376 0.39 -4.0 196,397 + GFF3376 0.39 +0.2 196,398 - GFF3376 0.39 -1.5 196,398 - GFF3376 0.39 -0.7 196,398 - GFF3376 0.39 -2.1 196,398 - GFF3376 0.39 -0.2 196,400 + GFF3376 0.39 -0.7 196,400 + GFF3376 0.39 +0.2 196,400 + GFF3376 0.39 -1.4 196,401 - GFF3376 0.39 +3.1 196,475 + GFF3376 0.44 +0.7 196,485 - GFF3376 0.45 +1.2 196,660 + GFF3376 0.56 -2.3 196,660 + GFF3376 0.56 -1.3
Or see this region's nucleotide sequence