Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3373 and GFF3374 are separated by 21 nucleotides GFF3374 and GFF3375 overlap by 4 nucleotides
GFF3373 - Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34), at 192,941 to 194,230
GFF3373
GFF3374 - no description, at 194,252 to 194,371
GFF3374
GFF3375 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 194,368 to 195,756
GFF3375
Position (kb) 194
195 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 193.329 kb on + strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.477 kb on - strand, within GFF3373 at 193.858 kb on - strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.008 kb on - strand, within GFF3373 at 194.274 kb on + strand, within GFF3374 at 194.274 kb on + strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.483 kb on - strand at 194.740 kb on + strand, within GFF3375 at 194.740 kb on + strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 195.175 kb on + strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.271 kb on + strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 193,329 + GFF3373 0.30 -1.5 193,330 - GFF3373 0.30 -0.3 193,330 - GFF3373 0.30 -1.7 193,350 + GFF3373 0.32 +0.5 193,350 + GFF3373 0.32 +0.8 193,476 + GFF3373 0.41 -0.2 193,476 + GFF3373 0.41 +0.5 193,477 - GFF3373 0.42 +0.4 193,858 - GFF3373 0.71 +0.2 194,007 + GFF3373 0.83 +0.7 194,007 + GFF3373 0.83 -0.4 194,008 - GFF3373 0.83 -0.1 194,274 + GFF3374 0.18 -4.1 194,274 + GFF3374 0.18 -1.5 194,275 - GFF3374 0.19 -0.8 194,275 - GFF3374 0.19 +0.9 194,483 - +0.2 194,740 + GFF3375 0.27 +0.3 194,740 + GFF3375 0.27 -1.9 194,741 - GFF3375 0.27 +0.0 194,741 - GFF3375 0.27 -1.6 194,741 - GFF3375 0.27 -0.8 195,175 + GFF3375 0.58 +0.2 195,176 - GFF3375 0.58 +1.3 195,176 - GFF3375 0.58 +0.2 195,271 + GFF3375 0.65 +2.3 195,272 - GFF3375 0.65 -0.3 195,272 - GFF3375 0.65 -0.7 195,272 - GFF3375 0.65 -2.5 195,272 - GFF3375 0.65 +0.7
Or see this region's nucleotide sequence