Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3365 and GFF3366 are separated by 3 nucleotides GFF3366 and GFF3367 are separated by 70 nucleotides GFF3367 and GFF3368 are separated by 139 nucleotides
GFF3365 - Cell division topological specificity factor MinE, at 185,702 to 185,980
GFF3365
GFF3366 - Septum site-determining protein MinD, at 185,984 to 186,799
GFF3366
GFF3367 - Septum site-determining protein MinC, at 186,870 to 187,643
GFF3367
GFF3368 - Pyrimidine permease, at 187,783 to 189,066
GFF3368
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 186.084 kb on + strand, within GFF3366 at 186.084 kb on + strand, within GFF3366 at 186.084 kb on + strand, within GFF3366 at 186.085 kb on - strand, within GFF3366 at 186.252 kb on + strand, within GFF3366 at 186.252 kb on + strand, within GFF3366 at 186.253 kb on - strand, within GFF3366 at 186.253 kb on - strand, within GFF3366 at 186.253 kb on - strand, within GFF3366 at 186.253 kb on - strand, within GFF3366 at 186.253 kb on - strand, within GFF3366 at 186.453 kb on + strand, within GFF3366 at 186.453 kb on + strand, within GFF3366 at 186.453 kb on + strand, within GFF3366 at 186.453 kb on + strand, within GFF3366 at 186.454 kb on - strand, within GFF3366 at 186.454 kb on - strand, within GFF3366 at 186.454 kb on - strand, within GFF3366 at 186.454 kb on - strand, within GFF3366 at 186.454 kb on - strand, within GFF3366 at 186.627 kb on + strand, within GFF3366 at 186.627 kb on + strand, within GFF3366 at 186.627 kb on + strand, within GFF3366 at 186.627 kb on + strand, within GFF3366 at 186.628 kb on - strand, within GFF3366 at 186.628 kb on - strand, within GFF3366 at 186.628 kb on - strand, within GFF3366 at 186.967 kb on + strand, within GFF3367 at 186.967 kb on + strand, within GFF3367 at 186.967 kb on + strand, within GFF3367 at 186.967 kb on + strand, within GFF3367 at 186.967 kb on + strand, within GFF3367 at 186.968 kb on - strand, within GFF3367 at 186.968 kb on - strand, within GFF3367 at 186.968 kb on - strand, within GFF3367 at 186.968 kb on - strand, within GFF3367 at 186.968 kb on - strand, within GFF3367 at 187.072 kb on + strand, within GFF3367 at 187.072 kb on + strand, within GFF3367 at 187.073 kb on - strand, within GFF3367 at 187.073 kb on - strand, within GFF3367 at 187.073 kb on - strand, within GFF3367 at 187.073 kb on - strand, within GFF3367 at 187.073 kb on - strand, within GFF3367 at 187.154 kb on - strand, within GFF3367 at 187.154 kb on - strand, within GFF3367 at 187.154 kb on - strand, within GFF3367 at 187.154 kb on - strand, within GFF3367 at 187.154 kb on - strand, within GFF3367 at 187.637 kb on - strand at 187.811 kb on + strand at 187.811 kb on + strand at 187.811 kb on + strand at 187.812 kb on - strand at 187.812 kb on - strand at 187.812 kb on - strand at 188.117 kb on + strand, within GFF3368 at 188.117 kb on + strand, within GFF3368 at 188.117 kb on + strand, within GFF3368 at 188.118 kb on - strand, within GFF3368 at 188.118 kb on - strand, within GFF3368 at 188.118 kb on - strand, within GFF3368 at 188.118 kb on - strand, within GFF3368 at 188.118 kb on - strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.156 kb on + strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.157 kb on - strand, within GFF3368 at 188.234 kb on + strand, within GFF3368 at 188.234 kb on + strand, within GFF3368 at 188.234 kb on + strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.235 kb on - strand, within GFF3368 at 188.447 kb on + strand, within GFF3368 at 188.448 kb on - strand, within GFF3368 at 188.448 kb on - strand, within GFF3368 at 188.448 kb on - strand, within GFF3368 at 188.448 kb on - strand, within GFF3368 at 188.585 kb on + strand, within GFF3368
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 186,084 + GFF3366 0.12 -1.7 186,084 + GFF3366 0.12 +0.5 186,084 + GFF3366 0.12 +0.7 186,085 - GFF3366 0.12 -1.3 186,252 + GFF3366 0.33 -0.0 186,252 + GFF3366 0.33 +0.5 186,253 - GFF3366 0.33 +0.8 186,253 - GFF3366 0.33 -1.7 186,253 - GFF3366 0.33 -2.1 186,253 - GFF3366 0.33 +0.5 186,253 - GFF3366 0.33 -0.8 186,453 + GFF3366 0.57 -2.2 186,453 + GFF3366 0.57 +2.1 186,453 + GFF3366 0.57 -0.5 186,453 + GFF3366 0.57 -0.2 186,454 - GFF3366 0.58 -2.0 186,454 - GFF3366 0.58 +0.9 186,454 - GFF3366 0.58 -0.1 186,454 - GFF3366 0.58 -1.1 186,454 - GFF3366 0.58 +2.6 186,627 + GFF3366 0.79 +0.9 186,627 + GFF3366 0.79 -0.1 186,627 + GFF3366 0.79 -0.4 186,627 + GFF3366 0.79 -1.1 186,628 - GFF3366 0.79 -2.5 186,628 - GFF3366 0.79 -0.0 186,628 - GFF3366 0.79 +2.2 186,967 + GFF3367 0.13 -0.1 186,967 + GFF3367 0.13 -2.0 186,967 + GFF3367 0.13 +0.9 186,967 + GFF3367 0.13 -1.0 186,967 + GFF3367 0.13 +3.6 186,968 - GFF3367 0.13 +0.5 186,968 - GFF3367 0.13 +0.5 186,968 - GFF3367 0.13 -1.9 186,968 - GFF3367 0.13 +0.5 186,968 - GFF3367 0.13 -1.6 187,072 + GFF3367 0.26 -0.1 187,072 + GFF3367 0.26 -2.2 187,073 - GFF3367 0.26 -0.6 187,073 - GFF3367 0.26 -0.3 187,073 - GFF3367 0.26 -0.9 187,073 - GFF3367 0.26 -1.0 187,073 - GFF3367 0.26 +0.8 187,154 - GFF3367 0.37 -0.3 187,154 - GFF3367 0.37 -1.4 187,154 - GFF3367 0.37 -0.2 187,154 - GFF3367 0.37 +0.4 187,154 - GFF3367 0.37 +0.5 187,637 - +0.9 187,811 + -2.6 187,811 + +0.7 187,811 + -0.5 187,812 - +1.4 187,812 - -0.6 187,812 - -3.1 188,117 + GFF3368 0.26 -2.6 188,117 + GFF3368 0.26 -1.4 188,117 + GFF3368 0.26 +0.3 188,118 - GFF3368 0.26 -1.1 188,118 - GFF3368 0.26 -2.2 188,118 - GFF3368 0.26 -0.2 188,118 - GFF3368 0.26 +2.6 188,118 - GFF3368 0.26 +0.7 188,156 + GFF3368 0.29 +0.4 188,156 + GFF3368 0.29 -0.4 188,156 + GFF3368 0.29 -0.4 188,156 + GFF3368 0.29 -1.4 188,156 + GFF3368 0.29 +4.9 188,156 + GFF3368 0.29 +0.5 188,156 + GFF3368 0.29 -0.5 188,156 + GFF3368 0.29 -0.5 188,156 + GFF3368 0.29 -0.3 188,157 - GFF3368 0.29 -2.8 188,157 - GFF3368 0.29 -0.6 188,157 - GFF3368 0.29 -2.0 188,157 - GFF3368 0.29 -1.8 188,157 - GFF3368 0.29 -0.2 188,157 - GFF3368 0.29 +1.7 188,157 - GFF3368 0.29 +1.5 188,157 - GFF3368 0.29 -0.5 188,157 - GFF3368 0.29 -1.3 188,234 + GFF3368 0.35 +2.4 188,234 + GFF3368 0.35 -1.3 188,234 + GFF3368 0.35 -0.5 188,235 - GFF3368 0.35 +2.0 188,235 - GFF3368 0.35 -0.8 188,235 - GFF3368 0.35 -1.2 188,235 - GFF3368 0.35 +0.7 188,235 - GFF3368 0.35 +0.4 188,235 - GFF3368 0.35 +1.5 188,235 - GFF3368 0.35 -0.8 188,235 - GFF3368 0.35 -2.9 188,235 - GFF3368 0.35 +0.4 188,235 - GFF3368 0.35 +0.1 188,235 - GFF3368 0.35 -0.8 188,235 - GFF3368 0.35 +1.5 188,447 + GFF3368 0.52 +0.0 188,448 - GFF3368 0.52 +0.5 188,448 - GFF3368 0.52 +0.4 188,448 - GFF3368 0.52 +0.2 188,448 - GFF3368 0.52 +1.5 188,585 + GFF3368 0.62 -2.9
Or see this region's nucleotide sequence