Strain Fitness in Variovorax sp. SCN45 around GFF3354

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
175,729	+				-0.0
175,730	-				+0.2
175,730	-				-1.8
175,921	-		GFF3353	0.17	-0.1
176,394	+		GFF3353	0.73	-0.3
176,395	-		GFF3353	0.74	-1.8
176,395	-		GFF3353	0.74	+0.4
176,502	+		GFF3353	0.86	+0.5
176,502	+		GFF3353	0.86	+1.0
176,502	+		GFF3353	0.86	+2.0
176,502	+		GFF3353	0.86	+1.2
176,503	-		GFF3353	0.86	+0.3
176,503	-		GFF3353	0.86	-0.3
176,503	-		GFF3353	0.86	-1.7
176,503	-		GFF3353	0.86	+2.0
176,570	-				-2.1
176,580	+				+0.5
176,581	-				+1.5
176,803	+		GFF3354	0.17	+0.1
176,803	+		GFF3354	0.17	-0.8
176,804	-		GFF3354	0.17	-0.4
176,804	-		GFF3354	0.17	-2.2
176,804	-		GFF3354	0.17	-0.7
176,804	-		GFF3354	0.17	-1.3
177,383	-		GFF3354	0.82	-1.5
177,544	+				-2.0
177,545	-				-3.5
177,924	+				-0.1
177,924	+				-0.5
177,924	+				-0.7
177,924	+				-0.3
177,925	-				+2.1
177,925	-				-2.6
177,925	-				+1.1
177,925	-				-0.7
177,925	-				+0.0
177,925	-				+0.0
178,058	+				-0.5
178,337	+		GFF3356	0.41	+4.3
178,337	+		GFF3356	0.41	+0.6
178,454	+		GFF3356	0.68	+0.2
178,454	+		GFF3356	0.68	-3.7
178,454	+		GFF3356	0.68	-0.7
178,454	+		GFF3356	0.68	-1.4
178,455	-		GFF3356	0.69	-1.8
178,455	-		GFF3356	0.69	+0.9
178,455	-		GFF3356	0.69	-0.3
178,455	-		GFF3356	0.69	-1.3
178,455	-		GFF3356	0.69	+0.3
178,455	-		GFF3356	0.69	-1.1
178,506	-		GFF3356	0.81	-0.2