Strain Fitness in Variovorax sp. SCN45 around GFF3302

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3301 and GFF3302 are separated by 129 nucleotidesGFF3302 and GFF3303 overlap by 4 nucleotidesGFF3303 and GFF3304 overlap by 4 nucleotides GFF3301 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 124,819 to 126,246 GFF3301 GFF3302 - no description, at 126,376 to 127,017 GFF3302 GFF3303 - Acetyltransferase, GNAT family, at 127,014 to 127,778 GFF3303 GFF3304 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 127,775 to 129,043 GFF3304 Position (kb) 126 127 128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.498 kb on + strand, within GFF3301at 125.499 kb on - strand, within GFF3301at 125.499 kb on - strand, within GFF3301at 125.621 kb on + strand, within GFF3301at 125.622 kb on - strand, within GFF3301at 125.622 kb on - strand, within GFF3301at 126.023 kb on + strand, within GFF3301at 126.207 kb on + strandat 126.207 kb on + strandat 126.207 kb on + strandat 126.286 kb on - strandat 126.355 kb on - strandat 126.406 kb on + strandat 126.407 kb on - strandat 126.407 kb on - strandat 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.729 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 127.015 kb on + strandat 127.016 kb on - strandat 127.037 kb on - strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.263 kb on - strand, within GFF3303at 127.316 kb on + strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.744 kb on - strandat 128.007 kb on + strand, within GFF3304at 128.008 kb on - strand, within GFF3304

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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125,423 + GFF3301 0.42 -1.4
125,423 + GFF3301 0.42 -1.2
125,423 + GFF3301 0.42 +1.5
125,423 + GFF3301 0.42 -1.1
125,423 + GFF3301 0.42 -0.9
125,423 + GFF3301 0.42 -1.8
125,423 + GFF3301 0.42 +0.6
125,423 + GFF3301 0.42 -0.2
125,423 + GFF3301 0.42 +0.1
125,423 + GFF3301 0.42 -0.3
125,423 + GFF3301 0.42 -2.3
125,423 + GFF3301 0.42 -3.5
125,423 + GFF3301 0.42 +2.5
125,424 - GFF3301 0.42 -0.8
125,424 - GFF3301 0.42 -2.2
125,424 - GFF3301 0.42 +1.8
125,424 - GFF3301 0.42 -3.6
125,424 - GFF3301 0.42 -0.0
125,424 - GFF3301 0.42 -3.9
125,424 - GFF3301 0.42 +0.1
125,424 - GFF3301 0.42 +2.7
125,424 - GFF3301 0.42 -1.2
125,424 - GFF3301 0.42 +0.5
125,424 - GFF3301 0.42 +3.5
125,424 - GFF3301 0.42 +1.2
125,424 - GFF3301 0.42 -2.2
125,424 - GFF3301 0.42 -0.1
125,498 + GFF3301 0.48 +2.6
125,499 - GFF3301 0.48 +1.9
125,499 - GFF3301 0.48 -0.5
125,621 + GFF3301 0.56 -1.3
125,622 - GFF3301 0.56 +0.2
125,622 - GFF3301 0.56 -1.1
126,023 + GFF3301 0.84 -1.4
126,207 + -0.2
126,207 + -2.7
126,207 + +0.1
126,286 - -0.6
126,355 - +0.4
126,406 + -1.4
126,407 - -1.4
126,407 - +0.7
126,670 + GFF3302 0.46 +1.5
126,670 + GFF3302 0.46 +0.3
126,670 + GFF3302 0.46 -1.6
126,670 + GFF3302 0.46 -2.4
126,670 + GFF3302 0.46 +1.3
126,670 + GFF3302 0.46 -1.3
126,670 + GFF3302 0.46 -1.2
126,670 + GFF3302 0.46 +0.5
126,670 + GFF3302 0.46 -3.2
126,670 + GFF3302 0.46 -3.0
126,670 + GFF3302 0.46 -2.2
126,671 - GFF3302 0.46 -3.1
126,671 - GFF3302 0.46 -2.2
126,671 - GFF3302 0.46 -2.3
126,671 - GFF3302 0.46 -1.2
126,671 - GFF3302 0.46 -3.1
126,671 - GFF3302 0.46 -1.3
126,729 + GFF3302 0.55 -2.8
126,880 + GFF3302 0.79 -2.2
126,880 + GFF3302 0.79 -0.8
126,880 + GFF3302 0.79 -1.0
126,880 + GFF3302 0.79 -0.8
126,880 + GFF3302 0.79 -2.3
126,880 + GFF3302 0.79 -0.5
126,880 + GFF3302 0.79 -2.3
126,881 - GFF3302 0.79 +0.0
126,881 - GFF3302 0.79 -2.2
126,881 - GFF3302 0.79 -1.4
126,881 - GFF3302 0.79 +0.8
126,881 - GFF3302 0.79 +0.5
126,881 - GFF3302 0.79 +0.5
126,881 - GFF3302 0.79 -2.1
126,881 - GFF3302 0.79 -3.2
126,881 - GFF3302 0.79 +0.2
126,881 - GFF3302 0.79 +2.5
126,881 - GFF3302 0.79 -0.6
126,881 - GFF3302 0.79 -3.3
126,881 - GFF3302 0.79 +0.9
127,015 + +2.3
127,016 - -0.5
127,037 - +1.6
127,069 + +2.5
127,069 + +0.5
127,069 + -0.5
127,069 + -1.6
127,069 + -0.3
127,069 + -0.5
127,070 - -3.2
127,070 - +0.3
127,070 - -1.0
127,070 - -2.0
127,070 - -1.3
127,070 - +0.5
127,263 - GFF3303 0.33 -0.8
127,316 + GFF3303 0.39 -0.1
127,317 - GFF3303 0.40 -0.8
127,317 - GFF3303 0.40 +0.5
127,317 - GFF3303 0.40 -0.2
127,317 - GFF3303 0.40 -0.6
127,487 - GFF3303 0.62 -1.0
127,487 - GFF3303 0.62 +0.7
127,487 - GFF3303 0.62 +0.3
127,744 - +0.1
128,007 + GFF3304 0.18 -0.7
128,008 - GFF3304 0.18 -0.2

Or see this region's nucleotide sequence