Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3184 and GFF3185 are separated by 64 nucleotides
GFF3184 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 625,551 to 627,512
GFF3184
GFF3185 - SAM-dependent methyltransferase, at 627,577 to 628,395
GFF3185
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 626.664 kb on + strand, within GFF3184 at 626.664 kb on + strand, within GFF3184 at 626.664 kb on + strand, within GFF3184 at 626.665 kb on - strand, within GFF3184 at 626.665 kb on - strand, within GFF3184 at 626.694 kb on + strand, within GFF3184 at 626.694 kb on + strand, within GFF3184 at 626.694 kb on + strand, within GFF3184 at 626.695 kb on - strand, within GFF3184 at 626.793 kb on + strand, within GFF3184 at 626.794 kb on - strand, within GFF3184 at 626.796 kb on + strand, within GFF3184 at 626.797 kb on - strand, within GFF3184 at 626.797 kb on - strand, within GFF3184 at 627.163 kb on + strand, within GFF3184 at 627.163 kb on + strand, within GFF3184 at 627.163 kb on + strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.164 kb on - strand, within GFF3184 at 627.510 kb on + strand at 627.511 kb on - strand at 627.511 kb on - strand at 627.511 kb on - strand at 627.734 kb on + strand, within GFF3185 at 627.734 kb on + strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.735 kb on - strand, within GFF3185 at 627.851 kb on + strand, within GFF3185 at 627.852 kb on - strand, within GFF3185 at 628.010 kb on + strand, within GFF3185 at 628.157 kb on + strand, within GFF3185 at 628.157 kb on + strand, within GFF3185 at 628.281 kb on - strand, within GFF3185 at 628.306 kb on + strand, within GFF3185 at 628.313 kb on + strand, within GFF3185 at 628.314 kb on - strand at 628.375 kb on + strand at 628.375 kb on + strand at 628.375 kb on + strand at 628.376 kb on - strand at 628.376 kb on - strand at 628.396 kb on + strand at 628.397 kb on - strand at 628.452 kb on - strand at 628.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 626,664 + GFF3184 0.57 +0.4 626,664 + GFF3184 0.57 +0.4 626,664 + GFF3184 0.57 +1.0 626,665 - GFF3184 0.57 +1.5 626,665 - GFF3184 0.57 -1.2 626,694 + GFF3184 0.58 -0.1 626,694 + GFF3184 0.58 +0.1 626,694 + GFF3184 0.58 -0.2 626,695 - GFF3184 0.58 +3.3 626,793 + GFF3184 0.63 -2.2 626,794 - GFF3184 0.63 -1.0 626,796 + GFF3184 0.63 -0.3 626,797 - GFF3184 0.64 +1.6 626,797 - GFF3184 0.64 -0.6 627,163 + GFF3184 0.82 -0.2 627,163 + GFF3184 0.82 -2.4 627,163 + GFF3184 0.82 +0.0 627,164 - GFF3184 0.82 -1.6 627,164 - GFF3184 0.82 -1.0 627,164 - GFF3184 0.82 -1.6 627,164 - GFF3184 0.82 +0.0 627,164 - GFF3184 0.82 +1.1 627,164 - GFF3184 0.82 -1.8 627,510 + -0.7 627,511 - -2.6 627,511 - -3.2 627,511 - -0.4 627,734 + GFF3185 0.19 -0.2 627,734 + GFF3185 0.19 -2.1 627,735 - GFF3185 0.19 -2.2 627,735 - GFF3185 0.19 +1.7 627,735 - GFF3185 0.19 -1.4 627,735 - GFF3185 0.19 -0.8 627,851 + GFF3185 0.33 -1.1 627,852 - GFF3185 0.34 +0.4 628,010 + GFF3185 0.53 +2.2 628,157 + GFF3185 0.71 -0.1 628,157 + GFF3185 0.71 -0.1 628,281 - GFF3185 0.86 -0.5 628,306 + GFF3185 0.89 +1.7 628,313 + GFF3185 0.90 -0.6 628,314 - -2.9 628,375 + +0.7 628,375 + -0.8 628,375 + -2.2 628,376 - -2.0 628,376 - +0.1 628,396 + -0.5 628,397 - -0.1 628,452 - -0.9 628,452 - +1.9
Or see this region's nucleotide sequence