Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3147 and GFF3148 overlap by 4 nucleotides GFF3148 and GFF3149 overlap by 4 nucleotides
GFF3147 - hypothetical protein, at 580,608 to 581,993
GFF3147
GFF3148 - no description, at 581,990 to 583,102
GFF3148
GFF3149 - RND efflux system, inner membrane transporter, at 583,099 to 586,152
GFF3149
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2 at 581.016 kb on + strand, within GFF3147 at 581.016 kb on + strand, within GFF3147 at 581.017 kb on - strand, within GFF3147 at 581.211 kb on + strand, within GFF3147 at 581.493 kb on + strand, within GFF3147 at 581.691 kb on + strand, within GFF3147 at 581.965 kb on - strand at 582.335 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.932 kb on + strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.933 kb on - strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.938 kb on + strand, within GFF3148 at 582.939 kb on - strand, within GFF3148 at 583.058 kb on + strand at 583.516 kb on + strand, within GFF3149 at 583.516 kb on + strand, within GFF3149 at 583.570 kb on + strand, within GFF3149 at 583.598 kb on + strand, within GFF3149 at 583.599 kb on - strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.762 kb on + strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.763 kb on - strand, within GFF3149 at 583.771 kb on + strand, within GFF3149 at 583.771 kb on + strand, within GFF3149
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 581,016 + GFF3147 0.29 -1.2 581,016 + GFF3147 0.29 +0.0 581,017 - GFF3147 0.30 -0.1 581,211 + GFF3147 0.44 -2.2 581,493 + GFF3147 0.64 +0.0 581,691 + GFF3147 0.78 +0.8 581,965 - -1.3 582,335 + GFF3148 0.31 +0.3 582,932 + GFF3148 0.85 +1.0 582,932 + GFF3148 0.85 -1.0 582,933 - GFF3148 0.85 -2.2 582,933 - GFF3148 0.85 -0.0 582,933 - GFF3148 0.85 -2.2 582,933 - GFF3148 0.85 -0.6 582,938 + GFF3148 0.85 -1.7 582,938 + GFF3148 0.85 -2.2 582,938 + GFF3148 0.85 -0.3 582,939 - GFF3148 0.85 +0.9 583,058 + -0.1 583,516 + GFF3149 0.14 +0.4 583,516 + GFF3149 0.14 -0.2 583,570 + GFF3149 0.15 +0.0 583,598 + GFF3149 0.16 +1.5 583,599 - GFF3149 0.16 +1.5 583,762 + GFF3149 0.22 -1.3 583,762 + GFF3149 0.22 -1.2 583,762 + GFF3149 0.22 -1.0 583,762 + GFF3149 0.22 -0.8 583,762 + GFF3149 0.22 +1.8 583,763 - GFF3149 0.22 -0.5 583,763 - GFF3149 0.22 +1.8 583,763 - GFF3149 0.22 -0.1 583,771 + GFF3149 0.22 -0.8 583,771 + GFF3149 0.22 -0.3
Or see this region's nucleotide sequence