Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3114 and GFF3115 are separated by 237 nucleotides GFF3115 and GFF3116 are separated by 388 nucleotides
GFF3114 - Methionine ABC transporter ATP-binding protein, at 540,573 to 541,460
GFF3114
GFF3115 - Methionine ABC transporter substrate-binding protein, at 541,698 to 542,513
GFF3115
GFF3116 - Peptide chain release factor 2 @ programmed frameshift-containing, at 542,902 to 543,804
GFF3116
Position (kb) 541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 541.000 kb on + strand, within GFF3114 at 541.000 kb on + strand, within GFF3114 at 541.521 kb on + strand at 541.522 kb on - strand at 541.608 kb on - strand at 541.623 kb on - strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.628 kb on + strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.629 kb on - strand at 541.902 kb on + strand, within GFF3115 at 541.902 kb on + strand, within GFF3115 at 541.902 kb on + strand, within GFF3115 at 541.903 kb on - strand, within GFF3115 at 541.903 kb on - strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.046 kb on + strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.047 kb on - strand, within GFF3115 at 542.376 kb on + strand, within GFF3115 at 542.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 541,000 + GFF3114 0.48 +0.6 541,000 + GFF3114 0.48 -1.3 541,521 + -1.4 541,522 - -0.2 541,608 - +1.3 541,623 - -1.4 541,628 + -0.3 541,628 + -2.0 541,628 + -0.7 541,628 + +0.2 541,628 + -0.3 541,628 + -0.3 541,628 + -1.0 541,629 - -0.2 541,629 - -1.2 541,629 - +1.2 541,629 - -0.9 541,629 - +1.8 541,629 - -1.8 541,902 + GFF3115 0.25 -0.7 541,902 + GFF3115 0.25 +1.6 541,902 + GFF3115 0.25 -0.6 541,903 - GFF3115 0.25 -2.2 541,903 - GFF3115 0.25 +2.3 542,046 + GFF3115 0.43 -0.3 542,046 + GFF3115 0.43 -1.2 542,046 + GFF3115 0.43 -1.4 542,046 + GFF3115 0.43 -0.3 542,047 - GFF3115 0.43 -3.4 542,047 - GFF3115 0.43 -1.9 542,047 - GFF3115 0.43 -1.3 542,047 - GFF3115 0.43 +1.0 542,376 + GFF3115 0.83 -1.7 542,625 + -0.5
Or see this region's nucleotide sequence