Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF308 and GFF309 overlap by 4 nucleotides GFF309 and GFF310 overlap by 4 nucleotides GFF310 and GFF311 overlap by 4 nucleotides
GFF308 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 341,331 to 342,062
GFF308
GFF309 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.59), at 342,059 to 342,532
GFF309
GFF310 - FIG025233: SAM-dependent methyltransferases, at 342,529 to 343,305
GFF310
GFF311 - Polysaccharide deacetylase, at 343,302 to 344,144
GFF311
Position (kb) 342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 341.374 kb on + strand at 341.374 kb on + strand at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 342.163 kb on - strand, within GFF309 at 342.163 kb on - strand, within GFF309 at 342.342 kb on + strand, within GFF309 at 342.342 kb on + strand, within GFF309 at 342.343 kb on - strand, within GFF309 at 342.851 kb on + strand, within GFF310 at 342.851 kb on + strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 343.001 kb on + strand, within GFF310 at 343.229 kb on + strand at 343.229 kb on + strand at 343.229 kb on + strand at 343.230 kb on - strand at 343.230 kb on - strand at 343.377 kb on + strand at 343.377 kb on + strand at 343.377 kb on + strand at 343.377 kb on + strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 341,374 + +1.3 341,374 + +1.1 341,602 + GFF308 0.37 +0.8 341,602 + GFF308 0.37 +0.1 341,602 + GFF308 0.37 +0.9 341,602 + GFF308 0.37 -0.7 341,602 + GFF308 0.37 -1.7 341,602 + GFF308 0.37 -1.9 341,602 + GFF308 0.37 -0.3 341,602 + GFF308 0.37 -1.9 341,602 + GFF308 0.37 +0.8 341,603 - GFF308 0.37 -2.0 341,603 - GFF308 0.37 -0.2 341,603 - GFF308 0.37 -1.4 341,603 - GFF308 0.37 +0.3 341,603 - GFF308 0.37 -1.2 341,603 - GFF308 0.37 -1.8 341,603 - GFF308 0.37 -1.2 342,163 - GFF309 0.22 +1.8 342,163 - GFF309 0.22 -0.8 342,342 + GFF309 0.60 -1.0 342,342 + GFF309 0.60 -3.1 342,343 - GFF309 0.60 +2.5 342,851 + GFF310 0.41 -1.8 342,851 + GFF310 0.41 -0.1 342,852 - GFF310 0.42 -1.9 342,852 - GFF310 0.42 -2.8 342,852 - GFF310 0.42 -0.8 343,001 + GFF310 0.61 +0.6 343,229 + -0.2 343,229 + -1.7 343,229 + -0.6 343,230 - -0.6 343,230 - -0.6 343,377 + -2.7 343,377 + +3.0 343,377 + +0.8 343,377 + +2.0 343,378 - -0.5 343,378 - +1.7 343,378 - -2.0 343,378 - +0.3 343,378 - +0.4 343,378 - +1.4 343,378 - -1.2 343,378 - -0.8
Or see this region's nucleotide sequence