Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3025 and GFF3026 overlap by 4 nucleotides GFF3026 and GFF3027 are separated by 20 nucleotides
GFF3025 - Proton/sodium-glutamate symport protein, at 453,233 to 454,702
GFF3025
GFF3026 - KEGG: type VI secretion system protein, at 454,699 to 455,172
GFF3026
GFF3027 - T6SS component TssK (ImpJ/VasE), at 455,193 to 456,515
GFF3027
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.815 kb on + strand, within GFF3025 at 453.815 kb on + strand, within GFF3025 at 453.816 kb on - strand, within GFF3025 at 453.816 kb on - strand, within GFF3025 at 454.196 kb on + strand, within GFF3025 at 454.196 kb on + strand, within GFF3025 at 454.197 kb on - strand, within GFF3025 at 454.197 kb on - strand, within GFF3025 at 454.199 kb on + strand, within GFF3025 at 454.200 kb on - strand, within GFF3025 at 454.232 kb on + strand, within GFF3025 at 454.233 kb on - strand, within GFF3025 at 454.662 kb on - strand at 454.976 kb on - strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.072 kb on - strand, within GFF3026 at 455.072 kb on - strand, within GFF3026 at 455.518 kb on - strand, within GFF3027 at 455.518 kb on - strand, within GFF3027 at 455.988 kb on + strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.088 kb on + strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.144 kb on + strand, within GFF3027
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 453,815 + GFF3025 0.40 -1.7 453,815 + GFF3025 0.40 +0.7 453,816 - GFF3025 0.40 -2.3 453,816 - GFF3025 0.40 -0.8 454,196 + GFF3025 0.66 -0.6 454,196 + GFF3025 0.66 +0.4 454,197 - GFF3025 0.66 -2.4 454,197 - GFF3025 0.66 -0.6 454,199 + GFF3025 0.66 -1.9 454,200 - GFF3025 0.66 +0.4 454,232 + GFF3025 0.68 -1.6 454,233 - GFF3025 0.68 +0.4 454,662 - -2.2 454,976 - GFF3026 0.58 -1.4 455,071 + GFF3026 0.78 -1.6 455,071 + GFF3026 0.78 -0.5 455,071 + GFF3026 0.78 -2.7 455,072 - GFF3026 0.79 -1.3 455,072 - GFF3026 0.79 +0.2 455,518 - GFF3027 0.25 -1.0 455,518 - GFF3027 0.25 -2.7 455,988 + GFF3027 0.60 -1.3 455,989 - GFF3027 0.60 -0.0 455,989 - GFF3027 0.60 -1.8 455,989 - GFF3027 0.60 +0.4 456,064 - GFF3027 0.66 +0.6 456,064 - GFF3027 0.66 -1.6 456,088 + GFF3027 0.68 +2.0 456,089 - GFF3027 0.68 -2.2 456,089 - GFF3027 0.68 +0.4 456,144 + GFF3027 0.72 +1.8
Or see this region's nucleotide sequence