Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3019 and GFF3020 are separated by 3 nucleotides GFF3020 and GFF3021 are separated by 63 nucleotides GFF3021 and GFF3022 overlap by 4 nucleotides GFF3022 and GFF3023 are separated by 23 nucleotides
GFF3019 - hypothetical protein, at 448,837 to 449,511
GFF3019
GFF3020 - FIG00966904: hypothetical protein, at 449,515 to 449,904
GFF3020
GFF3021 - no description, at 449,968 to 450,150
GFF3021
GFF3022 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 450,147 to 451,199
GFF3022
GFF3023 - C4-dicarboxylate transport protein, at 451,223 to 452,497
GFF3023
Position (kb) 450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.176 kb on + strand, within GFF3019 at 449.176 kb on + strand, within GFF3019 at 449.209 kb on + strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.282 kb on - strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.318 kb on - strand, within GFF3019 at 449.944 kb on + strand at 449.944 kb on + strand at 449.945 kb on - strand at 450.756 kb on + strand, within GFF3022 at 450.756 kb on + strand, within GFF3022 at 450.757 kb on - strand, within GFF3022 at 450.757 kb on - strand, within GFF3022 at 450.892 kb on - strand, within GFF3022 at 451.125 kb on + strand at 451.242 kb on - strand at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.353 kb on - strand, within GFF3023 at 451.353 kb on - strand, within GFF3023 at 451.817 kb on + strand, within GFF3023 at 451.817 kb on + strand, within GFF3023 at 451.818 kb on - strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.912 kb on - strand, within GFF3023
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 449,176 + GFF3019 0.50 +2.3 449,176 + GFF3019 0.50 +0.2 449,209 + GFF3019 0.55 -0.5 449,210 - GFF3019 0.55 +0.1 449,210 - GFF3019 0.55 -2.8 449,210 - GFF3019 0.55 -2.2 449,210 - GFF3019 0.55 -2.7 449,210 - GFF3019 0.55 -1.2 449,282 - GFF3019 0.66 -1.0 449,317 + GFF3019 0.71 -1.2 449,317 + GFF3019 0.71 -1.0 449,317 + GFF3019 0.71 -0.7 449,318 - GFF3019 0.71 -2.1 449,944 + -1.6 449,944 + -0.2 449,945 - -0.7 450,756 + GFF3022 0.58 +1.1 450,756 + GFF3022 0.58 +0.2 450,757 - GFF3022 0.58 +1.8 450,757 - GFF3022 0.58 -2.6 450,892 - GFF3022 0.71 +0.8 451,125 + +0.4 451,242 - -2.9 451,352 + GFF3023 0.10 +0.6 451,352 + GFF3023 0.10 +2.5 451,352 + GFF3023 0.10 +0.3 451,352 + GFF3023 0.10 -0.3 451,353 - GFF3023 0.10 -0.3 451,353 - GFF3023 0.10 -1.6 451,817 + GFF3023 0.47 -1.6 451,817 + GFF3023 0.47 +0.4 451,818 - GFF3023 0.47 -0.1 451,911 + GFF3023 0.54 -0.3 451,911 + GFF3023 0.54 +0.4 451,911 + GFF3023 0.54 -1.6 451,912 - GFF3023 0.54 -1.8
Or see this region's nucleotide sequence