Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2998 and GFF2999 are separated by 169 nucleotides GFF2999 and GFF3000 overlap by 4 nucleotides
GFF2998 - Virulence factor BrkB, at 428,132 to 429,343
GFF2998
GFF2999 - Putative transmembrane protein, at 429,513 to 429,875
GFF2999
GFF3000 - D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2), at 429,872 to 431,299
GFF3000
Position (kb) 429
430 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 428.520 kb on + strand, within GFF2998 at 428.520 kb on + strand, within GFF2998 at 428.521 kb on - strand, within GFF2998 at 428.565 kb on + strand, within GFF2998 at 428.565 kb on + strand, within GFF2998 at 428.565 kb on + strand, within GFF2998 at 428.565 kb on + strand, within GFF2998 at 428.566 kb on - strand, within GFF2998 at 428.566 kb on - strand, within GFF2998 at 428.566 kb on - strand, within GFF2998 at 428.566 kb on - strand, within GFF2998 at 428.566 kb on - strand, within GFF2998 at 428.608 kb on - strand, within GFF2998 at 428.619 kb on + strand, within GFF2998 at 428.619 kb on + strand, within GFF2998 at 428.620 kb on - strand, within GFF2998 at 428.620 kb on - strand, within GFF2998 at 428.620 kb on - strand, within GFF2998 at 428.640 kb on + strand, within GFF2998 at 428.640 kb on + strand, within GFF2998 at 428.640 kb on + strand, within GFF2998 at 428.640 kb on + strand, within GFF2998 at 428.641 kb on - strand, within GFF2998 at 428.641 kb on - strand, within GFF2998 at 428.641 kb on - strand, within GFF2998 at 428.641 kb on - strand, within GFF2998 at 428.643 kb on + strand, within GFF2998 at 428.643 kb on + strand, within GFF2998 at 428.643 kb on + strand, within GFF2998 at 428.644 kb on - strand, within GFF2998 at 428.736 kb on + strand, within GFF2998 at 428.736 kb on + strand, within GFF2998 at 428.736 kb on + strand, within GFF2998 at 428.736 kb on + strand, within GFF2998 at 428.737 kb on - strand, within GFF2998 at 428.737 kb on - strand, within GFF2998 at 428.737 kb on - strand, within GFF2998 at 428.737 kb on - strand, within GFF2998 at 428.737 kb on - strand, within GFF2998 at 428.737 kb on - strand, within GFF2998 at 428.742 kb on + strand, within GFF2998 at 428.742 kb on + strand, within GFF2998 at 428.742 kb on + strand, within GFF2998 at 428.742 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.844 kb on + strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.845 kb on - strand, within GFF2998 at 428.904 kb on + strand, within GFF2998 at 428.905 kb on - strand, within GFF2998 at 429.270 kb on - strand at 429.338 kb on + strand at 429.339 kb on - strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.343 kb on + strand at 429.344 kb on - strand at 429.344 kb on - strand at 429.344 kb on - strand at 429.344 kb on - strand at 429.344 kb on - strand at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.654 kb on + strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.655 kb on - strand, within GFF2999 at 429.660 kb on + strand, within GFF2999 at 429.660 kb on + strand, within GFF2999 at 429.661 kb on - strand, within GFF2999 at 429.661 kb on - strand, within GFF2999 at 429.661 kb on - strand, within GFF2999 at 429.661 kb on - strand, within GFF2999 at 429.661 kb on - strand, within GFF2999 at 429.690 kb on + strand, within GFF2999 at 429.691 kb on - strand, within GFF2999 at 429.691 kb on - strand, within GFF2999 at 429.691 kb on - strand, within GFF2999 at 429.931 kb on - strand at 429.931 kb on - strand at 429.931 kb on - strand at 429.931 kb on - strand at 429.956 kb on + strand at 430.445 kb on + strand, within GFF3000 at 430.719 kb on - strand, within GFF3000 at 430.719 kb on - strand, within GFF3000 at 430.719 kb on - strand, within GFF3000 at 430.719 kb on - strand, within GFF3000
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 428,520 + GFF2998 0.32 -0.8 428,520 + GFF2998 0.32 -0.6 428,521 - GFF2998 0.32 -0.5 428,565 + GFF2998 0.36 +1.0 428,565 + GFF2998 0.36 -1.2 428,565 + GFF2998 0.36 -1.5 428,565 + GFF2998 0.36 -2.4 428,566 - GFF2998 0.36 -0.2 428,566 - GFF2998 0.36 -0.8 428,566 - GFF2998 0.36 -0.4 428,566 - GFF2998 0.36 -0.9 428,566 - GFF2998 0.36 -1.0 428,608 - GFF2998 0.39 -3.6 428,619 + GFF2998 0.40 -1.5 428,619 + GFF2998 0.40 -0.7 428,620 - GFF2998 0.40 -0.3 428,620 - GFF2998 0.40 +2.6 428,620 - GFF2998 0.40 -1.3 428,640 + GFF2998 0.42 +0.9 428,640 + GFF2998 0.42 +0.8 428,640 + GFF2998 0.42 -1.7 428,640 + GFF2998 0.42 -2.1 428,641 - GFF2998 0.42 -2.6 428,641 - GFF2998 0.42 -2.4 428,641 - GFF2998 0.42 +1.5 428,641 - GFF2998 0.42 -1.2 428,643 + GFF2998 0.42 -2.3 428,643 + GFF2998 0.42 -1.6 428,643 + GFF2998 0.42 +1.6 428,644 - GFF2998 0.42 -1.9 428,736 + GFF2998 0.50 -2.9 428,736 + GFF2998 0.50 -1.4 428,736 + GFF2998 0.50 +1.3 428,736 + GFF2998 0.50 +1.0 428,737 - GFF2998 0.50 -0.2 428,737 - GFF2998 0.50 -3.0 428,737 - GFF2998 0.50 -1.2 428,737 - GFF2998 0.50 +0.1 428,737 - GFF2998 0.50 -0.1 428,737 - GFF2998 0.50 +0.9 428,742 + GFF2998 0.50 -1.5 428,742 + GFF2998 0.50 +0.9 428,742 + GFF2998 0.50 -0.9 428,742 + GFF2998 0.50 -2.3 428,844 + GFF2998 0.59 +0.1 428,844 + GFF2998 0.59 -0.5 428,844 + GFF2998 0.59 -0.6 428,844 + GFF2998 0.59 +0.6 428,844 + GFF2998 0.59 -0.7 428,844 + GFF2998 0.59 +0.7 428,844 + GFF2998 0.59 +0.9 428,844 + GFF2998 0.59 -0.4 428,845 - GFF2998 0.59 -0.8 428,845 - GFF2998 0.59 -1.0 428,845 - GFF2998 0.59 -3.7 428,845 - GFF2998 0.59 -1.0 428,845 - GFF2998 0.59 +0.3 428,845 - GFF2998 0.59 -1.3 428,845 - GFF2998 0.59 +1.0 428,845 - GFF2998 0.59 -1.4 428,845 - GFF2998 0.59 +0.4 428,845 - GFF2998 0.59 +0.4 428,845 - GFF2998 0.59 +0.3 428,845 - GFF2998 0.59 -0.2 428,904 + GFF2998 0.64 -1.0 428,905 - GFF2998 0.64 +1.0 429,270 - -2.2 429,338 + -1.3 429,339 - +0.8 429,343 + -1.7 429,343 + -4.1 429,343 + -2.0 429,343 + -0.8 429,343 + -0.8 429,343 + -0.1 429,343 + -1.5 429,343 + -0.6 429,343 + -0.6 429,344 - -0.3 429,344 - +0.8 429,344 - +1.2 429,344 - -0.1 429,344 - -0.3 429,654 + GFF2999 0.39 +2.5 429,654 + GFF2999 0.39 +2.0 429,654 + GFF2999 0.39 +0.2 429,654 + GFF2999 0.39 +0.1 429,654 + GFF2999 0.39 +4.3 429,654 + GFF2999 0.39 -1.8 429,654 + GFF2999 0.39 -3.1 429,654 + GFF2999 0.39 -3.8 429,654 + GFF2999 0.39 -1.5 429,654 + GFF2999 0.39 -2.7 429,654 + GFF2999 0.39 -0.5 429,654 + GFF2999 0.39 -0.9 429,654 + GFF2999 0.39 -0.3 429,654 + GFF2999 0.39 +1.0 429,654 + GFF2999 0.39 -1.9 429,655 - GFF2999 0.39 -0.3 429,655 - GFF2999 0.39 -0.6 429,655 - GFF2999 0.39 -0.9 429,655 - GFF2999 0.39 -1.1 429,655 - GFF2999 0.39 -2.2 429,655 - GFF2999 0.39 -0.7 429,655 - GFF2999 0.39 -1.9 429,655 - GFF2999 0.39 -0.6 429,655 - GFF2999 0.39 -1.6 429,655 - GFF2999 0.39 -1.0 429,655 - GFF2999 0.39 -0.8 429,655 - GFF2999 0.39 -1.8 429,655 - GFF2999 0.39 -0.8 429,655 - GFF2999 0.39 +1.5 429,655 - GFF2999 0.39 -3.0 429,655 - GFF2999 0.39 -1.0 429,655 - GFF2999 0.39 -0.8 429,655 - GFF2999 0.39 +0.2 429,655 - GFF2999 0.39 -2.5 429,660 + GFF2999 0.40 -0.4 429,660 + GFF2999 0.40 -1.7 429,661 - GFF2999 0.41 -2.2 429,661 - GFF2999 0.41 -2.3 429,661 - GFF2999 0.41 -2.5 429,661 - GFF2999 0.41 -0.3 429,661 - GFF2999 0.41 -2.9 429,690 + GFF2999 0.49 +0.5 429,691 - GFF2999 0.49 -1.8 429,691 - GFF2999 0.49 -0.9 429,691 - GFF2999 0.49 -1.0 429,931 - -1.3 429,931 - -0.6 429,931 - +0.9 429,931 - -1.7 429,956 + +0.4 430,445 + GFF3000 0.40 -3.1 430,719 - GFF3000 0.59 +0.6 430,719 - GFF3000 0.59 +1.4 430,719 - GFF3000 0.59 -2.2 430,719 - GFF3000 0.59 +0.1
Or see this region's nucleotide sequence