Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2887 and GFF2888 are separated by 7 nucleotides GFF2888 and GFF2889 overlap by 8 nucleotides GFF2889 and GFF2890 overlap by 4 nucleotides GFF2890 and GFF2891 are separated by 0 nucleotides
GFF2887 - Thioredoxin-like protein clustered with PA0057, at 313,294 to 314,025
GFF2887
GFF2888 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,033 to 314,737
GFF2888
GFF2889 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,730 to 315,491
GFF2889
GFF2890 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 315,488 to 316,486
GFF2890
GFF2891 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 316,487 to 317,359
GFF2891
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.799 kb on + strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.998 kb on - strand at 313.998 kb on - strand at 314.394 kb on + strand, within GFF2888 at 314.394 kb on + strand, within GFF2888 at 314.394 kb on + strand, within GFF2888 at 314.395 kb on - strand, within GFF2888 at 314.395 kb on - strand, within GFF2888 at 314.718 kb on - strand at 314.718 kb on - strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 315.041 kb on - strand, within GFF2889 at 315.603 kb on + strand, within GFF2890 at 315.603 kb on + strand, within GFF2890 at 315.604 kb on - strand, within GFF2890 at 315.673 kb on - strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.813 kb on + strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.814 kb on - strand, within GFF2890 at 315.960 kb on + strand, within GFF2890 at 315.961 kb on - strand, within GFF2890 at 315.981 kb on + strand, within GFF2890 at 315.982 kb on - strand, within GFF2890 at 316.246 kb on - strand, within GFF2890 at 316.297 kb on - strand, within GFF2890 at 316.297 kb on - strand, within GFF2890
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 313,799 + GFF2887 0.69 -2.8 313,800 - GFF2887 0.69 -1.6 313,800 - GFF2887 0.69 -0.8 313,800 - GFF2887 0.69 -1.2 313,800 - GFF2887 0.69 -0.3 313,998 - -3.4 313,998 - -1.0 314,394 + GFF2888 0.51 -0.3 314,394 + GFF2888 0.51 +2.0 314,394 + GFF2888 0.51 -2.0 314,395 - GFF2888 0.51 -0.4 314,395 - GFF2888 0.51 -3.7 314,718 - +0.3 314,718 - -0.9 314,761 + -0.8 314,761 + -2.0 314,761 + -3.4 314,761 + -0.2 314,761 + -2.6 314,761 + +2.0 314,762 - -2.1 314,762 - +0.2 314,762 - -2.5 314,762 - +1.6 314,762 - +2.0 314,762 - -1.7 314,762 - +0.8 314,762 - -1.8 315,041 - GFF2889 0.41 -0.1 315,603 + GFF2890 0.12 -0.5 315,603 + GFF2890 0.12 +0.8 315,604 - GFF2890 0.12 +1.1 315,673 - GFF2890 0.19 +1.5 315,813 + GFF2890 0.33 -1.3 315,813 + GFF2890 0.33 -2.6 315,813 + GFF2890 0.33 -0.2 315,814 - GFF2890 0.33 -2.7 315,814 - GFF2890 0.33 +0.5 315,814 - GFF2890 0.33 +0.0 315,814 - GFF2890 0.33 -1.6 315,814 - GFF2890 0.33 +1.2 315,960 + GFF2890 0.47 +0.6 315,961 - GFF2890 0.47 -1.9 315,981 + GFF2890 0.49 -0.3 315,982 - GFF2890 0.49 -2.1 316,246 - GFF2890 0.76 -1.3 316,297 - GFF2890 0.81 +1.6 316,297 - GFF2890 0.81 +1.6
Or see this region's nucleotide sequence