Strain Fitness in Variovorax sp. SCN45 around GFF2867

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2866 and GFF2867 overlap by 4 nucleotidesGFF2867 and GFF2868 are separated by 24 nucleotides GFF2866 - Uncharacterized MFS-type transporter, at 289,624 to 290,787 GFF2866 GFF2867 - DNA recombination protein RmuC, at 290,784 to 292,151 GFF2867 GFF2868 - Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215), at 292,176 to 293,162 GFF2868 Position (kb) 290 291 292 293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 289.910 kb on + strand, within GFF2866at 289.910 kb on + strand, within GFF2866at 289.911 kb on - strand, within GFF2866at 289.911 kb on - strand, within GFF2866at 289.911 kb on - strand, within GFF2866at 290.681 kb on + strandat 290.681 kb on + strandat 290.681 kb on + strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.682 kb on - strandat 290.965 kb on + strand, within GFF2867at 290.966 kb on - strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.157 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.217 kb on + strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.218 kb on - strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.328 kb on + strand, within GFF2867at 291.457 kb on + strand, within GFF2867at 291.457 kb on + strand, within GFF2867at 291.987 kb on + strand, within GFF2867at 291.988 kb on - strand, within GFF2867at 291.988 kb on - strand, within GFF2867at 292.136 kb on + strandat 292.136 kb on + strandat 292.136 kb on + strandat 292.137 kb on - strandat 292.137 kb on - strandat 292.177 kb on + strandat 292.177 kb on + strandat 292.177 kb on + strandat 292.178 kb on - strandat 292.235 kb on - strandat 292.301 kb on + strand, within GFF2868at 292.525 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.582 kb on + strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.583 kb on - strand, within GFF2868at 292.636 kb on + strand, within GFF2868at 292.636 kb on + strand, within GFF2868at 292.637 kb on - strand, within GFF2868at 292.637 kb on - strand, within GFF2868at 292.927 kb on + strand, within GFF2868at 292.927 kb on + strand, within GFF2868at 292.928 kb on - strand, within GFF2868at 292.928 kb on - strand, within GFF2868at 292.928 kb on - strand, within GFF2868

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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289,910 + GFF2866 0.25 +0.2
289,910 + GFF2866 0.25 -0.7
289,911 - GFF2866 0.25 +3.0
289,911 - GFF2866 0.25 -0.1
289,911 - GFF2866 0.25 -2.2
290,681 + -2.7
290,681 + -2.3
290,681 + -0.3
290,682 - +0.9
290,682 - +0.8
290,682 - -0.4
290,682 - -0.0
290,682 - +1.0
290,682 - -0.6
290,965 + GFF2867 0.13 +1.3
290,966 - GFF2867 0.13 -0.0
291,157 + GFF2867 0.27 -1.1
291,157 + GFF2867 0.27 +0.2
291,157 + GFF2867 0.27 -0.6
291,157 + GFF2867 0.27 -1.8
291,217 + GFF2867 0.32 +0.3
291,217 + GFF2867 0.32 +0.2
291,217 + GFF2867 0.32 -0.5
291,217 + GFF2867 0.32 -2.0
291,218 - GFF2867 0.32 +1.0
291,218 - GFF2867 0.32 +1.5
291,218 - GFF2867 0.32 +0.1
291,218 - GFF2867 0.32 -2.5
291,218 - GFF2867 0.32 -1.3
291,218 - GFF2867 0.32 +0.1
291,328 + GFF2867 0.40 +0.1
291,328 + GFF2867 0.40 -0.9
291,328 + GFF2867 0.40 -2.5
291,328 + GFF2867 0.40 +3.8
291,457 + GFF2867 0.49 -1.5
291,457 + GFF2867 0.49 +0.0
291,987 + GFF2867 0.88 +0.8
291,988 - GFF2867 0.88 +0.5
291,988 - GFF2867 0.88 +1.2
292,136 + -1.5
292,136 + -1.7
292,136 + -0.7
292,137 - -0.9
292,137 - +0.2
292,177 + +0.1
292,177 + -2.3
292,177 + +0.0
292,178 - -4.0
292,235 - -2.5
292,301 + GFF2868 0.13 -2.4
292,525 + GFF2868 0.35 -0.1
292,582 + GFF2868 0.41 +0.6
292,582 + GFF2868 0.41 -1.7
292,582 + GFF2868 0.41 +1.9
292,582 + GFF2868 0.41 -0.9
292,583 - GFF2868 0.41 -1.6
292,583 - GFF2868 0.41 -1.6
292,583 - GFF2868 0.41 -1.5
292,583 - GFF2868 0.41 +1.9
292,583 - GFF2868 0.41 -2.8
292,583 - GFF2868 0.41 -0.6
292,583 - GFF2868 0.41 -0.2
292,636 + GFF2868 0.47 -1.6
292,636 + GFF2868 0.47 +0.4
292,637 - GFF2868 0.47 +0.5
292,637 - GFF2868 0.47 -0.5
292,927 + GFF2868 0.76 -1.3
292,927 + GFF2868 0.76 +1.0
292,928 - GFF2868 0.76 +0.5
292,928 - GFF2868 0.76 -1.5
292,928 - GFF2868 0.76 +0.4

Or see this region's nucleotide sequence