Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2591 and GFF2592 are separated by 88 nucleotides GFF2592 and GFF2593 overlap by 31 nucleotides
GFF2591 - Virulence factor mviM, at 647,203 to 647,889
GFF2591
GFF2592 - no description, at 647,978 to 648,457
GFF2592
GFF2593 - Integral membrane protein, at 648,427 to 649,020
GFF2593
Position (kb) 648
649
650 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 647.441 kb on - strand, within GFF2591 at 647.447 kb on - strand, within GFF2591 at 647.752 kb on + strand, within GFF2591 at 647.752 kb on + strand, within GFF2591 at 647.752 kb on + strand, within GFF2591 at 647.753 kb on - strand, within GFF2591 at 647.753 kb on - strand, within GFF2591 at 647.936 kb on + strand at 647.936 kb on + strand at 647.937 kb on - strand at 647.937 kb on - strand at 647.937 kb on - strand at 648.083 kb on + strand, within GFF2592 at 648.083 kb on + strand, within GFF2592 at 648.083 kb on + strand, within GFF2592 at 648.083 kb on + strand, within GFF2592 at 648.083 kb on + strand, within GFF2592 at 648.084 kb on - strand, within GFF2592 at 648.200 kb on + strand, within GFF2592 at 648.200 kb on + strand, within GFF2592 at 648.201 kb on - strand, within GFF2592 at 648.201 kb on - strand, within GFF2592 at 648.201 kb on - strand, within GFF2592 at 648.201 kb on - strand, within GFF2592 at 648.201 kb on - strand, within GFF2592 at 648.201 kb on - strand, within GFF2592 at 648.438 kb on + strand at 648.438 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.455 kb on + strand at 648.605 kb on - strand, within GFF2593 at 648.671 kb on + strand, within GFF2593 at 648.671 kb on + strand, within GFF2593 at 648.672 kb on - strand, within GFF2593 at 648.672 kb on - strand, within GFF2593 at 648.672 kb on - strand, within GFF2593 at 648.752 kb on + strand, within GFF2593 at 648.752 kb on + strand, within GFF2593 at 648.752 kb on + strand, within GFF2593 at 648.752 kb on + strand, within GFF2593 at 648.752 kb on + strand, within GFF2593 at 648.752 kb on + strand, within GFF2593 at 648.753 kb on - strand, within GFF2593 at 648.753 kb on - strand, within GFF2593 at 648.753 kb on - strand, within GFF2593 at 648.753 kb on - strand, within GFF2593 at 648.753 kb on - strand, within GFF2593 at 648.774 kb on - strand, within GFF2593 at 648.842 kb on + strand, within GFF2593 at 648.842 kb on + strand, within GFF2593 at 648.842 kb on + strand, within GFF2593 at 648.842 kb on + strand, within GFF2593 at 648.843 kb on - strand, within GFF2593 at 648.843 kb on - strand, within GFF2593 at 648.843 kb on - strand, within GFF2593 at 648.857 kb on + strand, within GFF2593 at 648.858 kb on - strand, within GFF2593 at 648.897 kb on - strand, within GFF2593 at 649.016 kb on + strand at 649.016 kb on + strand at 649.017 kb on - strand at 649.017 kb on - strand at 649.017 kb on - strand at 649.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 647,441 - GFF2591 0.35 +0.2 647,447 - GFF2591 0.36 +2.8 647,752 + GFF2591 0.80 +0.5 647,752 + GFF2591 0.80 -0.3 647,752 + GFF2591 0.80 -1.2 647,753 - GFF2591 0.80 +0.7 647,753 - GFF2591 0.80 -0.9 647,936 + -1.9 647,936 + +1.5 647,937 - +2.3 647,937 - -0.4 647,937 - +0.1 648,083 + GFF2592 0.22 +0.9 648,083 + GFF2592 0.22 +0.1 648,083 + GFF2592 0.22 +0.3 648,083 + GFF2592 0.22 -0.6 648,083 + GFF2592 0.22 -0.3 648,084 - GFF2592 0.22 -0.1 648,200 + GFF2592 0.46 +0.6 648,200 + GFF2592 0.46 +0.1 648,201 - GFF2592 0.46 +0.2 648,201 - GFF2592 0.46 +0.2 648,201 - GFF2592 0.46 +0.6 648,201 - GFF2592 0.46 +0.8 648,201 - GFF2592 0.46 +1.1 648,201 - GFF2592 0.46 -0.6 648,438 + -0.3 648,438 + +1.5 648,455 + -0.4 648,455 + +0.7 648,455 + -1.4 648,605 - GFF2593 0.30 -1.2 648,671 + GFF2593 0.41 +1.0 648,671 + GFF2593 0.41 -0.4 648,672 - GFF2593 0.41 -0.9 648,672 - GFF2593 0.41 -0.9 648,672 - GFF2593 0.41 -2.1 648,752 + GFF2593 0.55 +1.2 648,752 + GFF2593 0.55 +0.6 648,752 + GFF2593 0.55 +0.8 648,752 + GFF2593 0.55 +0.2 648,752 + GFF2593 0.55 -2.7 648,752 + GFF2593 0.55 +1.3 648,753 - GFF2593 0.55 -1.0 648,753 - GFF2593 0.55 -0.8 648,753 - GFF2593 0.55 -0.7 648,753 - GFF2593 0.55 -0.9 648,753 - GFF2593 0.55 +0.1 648,774 - GFF2593 0.58 -0.0 648,842 + GFF2593 0.70 +0.3 648,842 + GFF2593 0.70 -0.2 648,842 + GFF2593 0.70 -0.7 648,842 + GFF2593 0.70 +0.1 648,843 - GFF2593 0.70 -1.1 648,843 - GFF2593 0.70 -0.6 648,843 - GFF2593 0.70 -2.6 648,857 + GFF2593 0.72 +0.4 648,858 - GFF2593 0.73 +0.4 648,897 - GFF2593 0.79 -2.1 649,016 + +0.1 649,016 + +0.4 649,017 - +0.1 649,017 - +0.9 649,017 - -0.2 649,036 - -2.4
Or see this region's nucleotide sequence