Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2499 and GFF2500 overlap by 4 nucleotides GFF2500 and GFF2501 are separated by 86 nucleotides GFF2501 and GFF2502 are separated by 18 nucleotides
GFF2499 - ATP/GTP-binding protein, at 559,604 to 560,479
GFF2499
GFF2500 - Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-), at 560,476 to 560,910
GFF2500
GFF2501 - O-antigen acetylase, at 560,997 to 562,961
GFF2501
GFF2502 - O-antigen acetylase, at 562,980 to 564,953
GFF2502
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 560.081 kb on + strand, within GFF2499 at 560.081 kb on + strand, within GFF2499 at 560.081 kb on + strand, within GFF2499 at 560.081 kb on + strand, within GFF2499 at 560.081 kb on + strand, within GFF2499 at 560.082 kb on - strand, within GFF2499 at 560.082 kb on - strand, within GFF2499 at 560.082 kb on - strand, within GFF2499 at 560.082 kb on - strand, within GFF2499 at 560.144 kb on + strand, within GFF2499 at 560.145 kb on - strand, within GFF2499 at 560.145 kb on - strand, within GFF2499 at 560.145 kb on - strand, within GFF2499 at 560.180 kb on + strand, within GFF2499 at 560.181 kb on - strand, within GFF2499 at 560.181 kb on - strand, within GFF2499 at 560.201 kb on + strand, within GFF2499 at 560.201 kb on + strand, within GFF2499 at 560.202 kb on - strand, within GFF2499 at 560.202 kb on - strand, within GFF2499 at 560.294 kb on + strand, within GFF2499 at 560.294 kb on + strand, within GFF2499 at 560.295 kb on - strand, within GFF2499 at 560.295 kb on - strand, within GFF2499 at 560.295 kb on - strand, within GFF2499 at 560.295 kb on - strand, within GFF2499 at 560.315 kb on + strand, within GFF2499 at 560.315 kb on + strand, within GFF2499 at 560.316 kb on - strand, within GFF2499 at 560.316 kb on - strand, within GFF2499 at 560.438 kb on + strand at 560.439 kb on - strand at 560.456 kb on + strand at 560.457 kb on - strand at 560.457 kb on - strand at 560.575 kb on + strand, within GFF2500 at 560.575 kb on + strand, within GFF2500 at 560.576 kb on - strand, within GFF2500 at 560.584 kb on + strand, within GFF2500 at 560.585 kb on - strand, within GFF2500 at 560.713 kb on + strand, within GFF2500 at 560.908 kb on + strand at 560.908 kb on + strand at 560.909 kb on - strand at 560.909 kb on - strand at 560.909 kb on - strand at 560.973 kb on + strand at 561.009 kb on + strand at 561.009 kb on + strand at 561.009 kb on + strand at 561.009 kb on + strand at 561.010 kb on - strand at 561.010 kb on - strand at 561.031 kb on + strand at 561.032 kb on - strand at 561.063 kb on + strand at 561.063 kb on + strand at 561.063 kb on + strand at 561.064 kb on - strand at 561.064 kb on - strand at 561.178 kb on + strand at 561.195 kb on + strand, within GFF2501 at 561.195 kb on + strand, within GFF2501 at 561.195 kb on + strand, within GFF2501 at 561.195 kb on + strand, within GFF2501 at 561.195 kb on + strand, within GFF2501 at 561.196 kb on - strand, within GFF2501 at 561.217 kb on + strand, within GFF2501 at 561.217 kb on + strand, within GFF2501 at 561.217 kb on + strand, within GFF2501 at 561.218 kb on - strand, within GFF2501 at 561.267 kb on + strand, within GFF2501 at 561.267 kb on + strand, within GFF2501 at 561.268 kb on - strand, within GFF2501 at 561.268 kb on - strand, within GFF2501 at 561.268 kb on - strand, within GFF2501 at 561.363 kb on + strand, within GFF2501 at 561.432 kb on + strand, within GFF2501 at 561.433 kb on - strand, within GFF2501 at 561.433 kb on - strand, within GFF2501 at 561.434 kb on + strand, within GFF2501 at 561.434 kb on + strand, within GFF2501 at 561.435 kb on - strand, within GFF2501 at 561.497 kb on - strand, within GFF2501 at 561.567 kb on + strand, within GFF2501 at 561.567 kb on + strand, within GFF2501 at 561.567 kb on + strand, within GFF2501 at 561.567 kb on + strand, within GFF2501 at 561.567 kb on + strand, within GFF2501 at 561.568 kb on - strand, within GFF2501 at 561.755 kb on + strand, within GFF2501 at 561.755 kb on + strand, within GFF2501 at 561.755 kb on + strand, within GFF2501 at 561.756 kb on - strand, within GFF2501 at 561.810 kb on + strand, within GFF2501 at 561.810 kb on + strand, within GFF2501 at 561.811 kb on - strand, within GFF2501 at 561.811 kb on - strand, within GFF2501 at 561.811 kb on - strand, within GFF2501 at 561.811 kb on - strand, within GFF2501 at 561.811 kb on - strand, within GFF2501 at 561.835 kb on + strand, within GFF2501 at 561.835 kb on + strand, within GFF2501 at 561.836 kb on - strand, within GFF2501 at 561.836 kb on - strand, within GFF2501 at 561.836 kb on - strand, within GFF2501 at 561.855 kb on + strand, within GFF2501 at 561.856 kb on - strand, within GFF2501 at 561.864 kb on + strand, within GFF2501 at 561.864 kb on + strand, within GFF2501 at 561.864 kb on + strand, within GFF2501 at 561.865 kb on - strand, within GFF2501 at 561.865 kb on - strand, within GFF2501 at 561.891 kb on + strand, within GFF2501 at 561.891 kb on + strand, within GFF2501 at 561.891 kb on + strand, within GFF2501 at 561.891 kb on + strand, within GFF2501 at 561.891 kb on + strand, within GFF2501 at 561.891 kb on + strand, within GFF2501 at 561.892 kb on - strand, within GFF2501 at 561.892 kb on - strand, within GFF2501 at 561.892 kb on - strand, within GFF2501 at 561.892 kb on - strand, within GFF2501 at 561.892 kb on - strand, within GFF2501 at 561.892 kb on - strand, within GFF2501 at 561.964 kb on + strand, within GFF2501 at 561.964 kb on + strand, within GFF2501 at 561.964 kb on + strand, within GFF2501 at 561.964 kb on + strand, within GFF2501 at 561.964 kb on + strand, within GFF2501 at 561.964 kb on + strand, within GFF2501 at 561.964 kb on + strand, within GFF2501 at 561.965 kb on - strand, within GFF2501 at 561.965 kb on - strand, within GFF2501 at 561.965 kb on - strand, within GFF2501 at 561.965 kb on - strand, within GFF2501 at 561.965 kb on - strand, within GFF2501 at 561.984 kb on + strand, within GFF2501 at 561.985 kb on - strand, within GFF2501 at 561.985 kb on - strand, within GFF2501 at 561.985 kb on - strand, within GFF2501 at 562.060 kb on + strand, within GFF2501 at 562.060 kb on + strand, within GFF2501 at 562.060 kb on + strand, within GFF2501 at 562.060 kb on + strand, within GFF2501 at 562.061 kb on - strand, within GFF2501 at 562.061 kb on - strand, within GFF2501 at 562.069 kb on + strand, within GFF2501 at 562.161 kb on + strand, within GFF2501 at 562.162 kb on - strand, within GFF2501 at 562.164 kb on + strand, within GFF2501 at 562.164 kb on + strand, within GFF2501 at 562.165 kb on - strand, within GFF2501 at 562.165 kb on - strand, within GFF2501 at 562.206 kb on + strand, within GFF2501 at 562.206 kb on + strand, within GFF2501 at 562.206 kb on + strand, within GFF2501 at 562.206 kb on + strand, within GFF2501 at 562.207 kb on - strand, within GFF2501 at 562.232 kb on + strand, within GFF2501 at 562.233 kb on - strand, within GFF2501 at 562.233 kb on - strand, within GFF2501 at 562.267 kb on - strand, within GFF2501 at 562.324 kb on - strand, within GFF2501 at 562.403 kb on + strand, within GFF2501 at 562.403 kb on + strand, within GFF2501 at 562.404 kb on - strand, within GFF2501 at 562.404 kb on - strand, within GFF2501 at 562.404 kb on - strand, within GFF2501 at 562.422 kb on + strand, within GFF2501 at 562.423 kb on - strand, within GFF2501 at 562.470 kb on + strand, within GFF2501 at 562.470 kb on + strand, within GFF2501 at 562.470 kb on + strand, within GFF2501 at 562.471 kb on - strand, within GFF2501 at 562.471 kb on - strand, within GFF2501 at 562.471 kb on - strand, within GFF2501 at 562.498 kb on - strand, within GFF2501 at 562.498 kb on - strand, within GFF2501 at 562.498 kb on - strand, within GFF2501 at 562.500 kb on + strand, within GFF2501 at 562.501 kb on - strand, within GFF2501 at 562.501 kb on - strand, within GFF2501 at 562.501 kb on - strand, within GFF2501 at 562.614 kb on + strand, within GFF2501 at 562.614 kb on + strand, within GFF2501 at 562.614 kb on + strand, within GFF2501 at 562.615 kb on - strand, within GFF2501 at 562.615 kb on - strand, within GFF2501 at 562.615 kb on - strand, within GFF2501 at 562.712 kb on + strand, within GFF2501 at 562.860 kb on + strand at 562.860 kb on + strand at 562.861 kb on - strand at 562.861 kb on - strand at 562.861 kb on - strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.911 kb on + strand at 562.912 kb on - strand at 562.912 kb on - strand at 562.912 kb on - strand at 562.912 kb on - strand at 562.912 kb on - strand at 562.912 kb on - strand at 562.992 kb on + strand at 562.993 kb on - strand at 563.046 kb on + strand at 563.046 kb on + strand at 563.046 kb on + strand at 563.047 kb on - strand at 563.047 kb on - strand at 563.047 kb on - strand at 563.047 kb on - strand at 563.047 kb on - strand at 563.178 kb on + strand, within GFF2502 at 563.178 kb on + strand, within GFF2502 at 563.178 kb on + strand, within GFF2502 at 563.179 kb on - strand, within GFF2502 at 563.179 kb on - strand, within GFF2502 at 563.179 kb on - strand, within GFF2502 at 563.232 kb on - strand, within GFF2502 at 563.232 kb on - strand, within GFF2502 at 563.250 kb on + strand, within GFF2502 at 563.250 kb on + strand, within GFF2502 at 563.250 kb on + strand, within GFF2502 at 563.250 kb on + strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.251 kb on - strand, within GFF2502 at 563.415 kb on + strand, within GFF2502 at 563.415 kb on + strand, within GFF2502 at 563.416 kb on - strand, within GFF2502 at 563.416 kb on - strand, within GFF2502 at 563.416 kb on - strand, within GFF2502 at 563.416 kb on - strand, within GFF2502 at 563.550 kb on + strand, within GFF2502 at 563.550 kb on + strand, within GFF2502 at 563.752 kb on + strand, within GFF2502 at 563.753 kb on - strand, within GFF2502 at 563.806 kb on - strand, within GFF2502 at 563.851 kb on - strand, within GFF2502 at 563.859 kb on + strand, within GFF2502 at 563.859 kb on + strand, within GFF2502 at 563.859 kb on + strand, within GFF2502 at 563.860 kb on - strand, within GFF2502 at 563.860 kb on - strand, within GFF2502 at 563.860 kb on - strand, within GFF2502 at 563.860 kb on - strand, within GFF2502
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 560,081 + GFF2499 0.54 -2.7 560,081 + GFF2499 0.54 -1.7 560,081 + GFF2499 0.54 +0.1 560,081 + GFF2499 0.54 -3.2 560,081 + GFF2499 0.54 -0.4 560,082 - GFF2499 0.55 +0.1 560,082 - GFF2499 0.55 -3.0 560,082 - GFF2499 0.55 -0.2 560,082 - GFF2499 0.55 -1.6 560,144 + GFF2499 0.62 -2.9 560,145 - GFF2499 0.62 -0.7 560,145 - GFF2499 0.62 -0.6 560,145 - GFF2499 0.62 -2.2 560,180 + GFF2499 0.66 +0.1 560,181 - GFF2499 0.66 -0.9 560,181 - GFF2499 0.66 -0.4 560,201 + GFF2499 0.68 -1.4 560,201 + GFF2499 0.68 -0.8 560,202 - GFF2499 0.68 -3.1 560,202 - GFF2499 0.68 -1.7 560,294 + GFF2499 0.79 -1.8 560,294 + GFF2499 0.79 -1.9 560,295 - GFF2499 0.79 +1.7 560,295 - GFF2499 0.79 +0.1 560,295 - GFF2499 0.79 -2.7 560,295 - GFF2499 0.79 -2.9 560,315 + GFF2499 0.81 +0.2 560,315 + GFF2499 0.81 -1.3 560,316 - GFF2499 0.81 -0.4 560,316 - GFF2499 0.81 -0.7 560,438 + -2.9 560,439 - -0.7 560,456 + -3.8 560,457 - +1.3 560,457 - -1.3 560,575 + GFF2500 0.23 -0.0 560,575 + GFF2500 0.23 -1.2 560,576 - GFF2500 0.23 -0.4 560,584 + GFF2500 0.25 +0.1 560,585 - GFF2500 0.25 -0.6 560,713 + GFF2500 0.54 -1.9 560,908 + +1.0 560,908 + +0.4 560,909 - +3.0 560,909 - -1.0 560,909 - -2.1 560,973 + -1.4 561,009 + +1.1 561,009 + -1.8 561,009 + -0.4 561,009 + +0.1 561,010 - -2.3 561,010 - +1.6 561,031 + -0.5 561,032 - +2.0 561,063 + +1.4 561,063 + -0.8 561,063 + +2.8 561,064 - +1.0 561,064 - +0.3 561,178 + -0.9 561,195 + GFF2501 0.10 -1.9 561,195 + GFF2501 0.10 -0.9 561,195 + GFF2501 0.10 +1.0 561,195 + GFF2501 0.10 -0.1 561,195 + GFF2501 0.10 -0.8 561,196 - GFF2501 0.10 -3.1 561,217 + GFF2501 0.11 +0.1 561,217 + GFF2501 0.11 -1.6 561,217 + GFF2501 0.11 +1.7 561,218 - GFF2501 0.11 +0.1 561,267 + GFF2501 0.14 +1.0 561,267 + GFF2501 0.14 -3.3 561,268 - GFF2501 0.14 +0.7 561,268 - GFF2501 0.14 -3.2 561,268 - GFF2501 0.14 -2.7 561,363 + GFF2501 0.19 -2.1 561,432 + GFF2501 0.22 -0.7 561,433 - GFF2501 0.22 +0.4 561,433 - GFF2501 0.22 +0.5 561,434 + GFF2501 0.22 +0.5 561,434 + GFF2501 0.22 +0.4 561,435 - GFF2501 0.22 -0.3 561,497 - GFF2501 0.25 +0.1 561,567 + GFF2501 0.29 -0.3 561,567 + GFF2501 0.29 +1.3 561,567 + GFF2501 0.29 -2.1 561,567 + GFF2501 0.29 -1.0 561,567 + GFF2501 0.29 -1.4 561,568 - GFF2501 0.29 -2.9 561,755 + GFF2501 0.39 -1.4 561,755 + GFF2501 0.39 -1.6 561,755 + GFF2501 0.39 +0.4 561,756 - GFF2501 0.39 -2.6 561,810 + GFF2501 0.41 -3.6 561,810 + GFF2501 0.41 -2.4 561,811 - GFF2501 0.41 -0.2 561,811 - GFF2501 0.41 -0.4 561,811 - GFF2501 0.41 -3.0 561,811 - GFF2501 0.41 -1.2 561,811 - GFF2501 0.41 -0.2 561,835 + GFF2501 0.43 -2.5 561,835 + GFF2501 0.43 -2.8 561,836 - GFF2501 0.43 -0.3 561,836 - GFF2501 0.43 +0.3 561,836 - GFF2501 0.43 -0.7 561,855 + GFF2501 0.44 +0.6 561,856 - GFF2501 0.44 +0.6 561,864 + GFF2501 0.44 -0.8 561,864 + GFF2501 0.44 -2.2 561,864 + GFF2501 0.44 -0.7 561,865 - GFF2501 0.44 -0.7 561,865 - GFF2501 0.44 +0.1 561,891 + GFF2501 0.45 -0.9 561,891 + GFF2501 0.45 +0.6 561,891 + GFF2501 0.45 -2.0 561,891 + GFF2501 0.45 -0.5 561,891 + GFF2501 0.45 -2.4 561,891 + GFF2501 0.45 -0.6 561,892 - GFF2501 0.46 -0.4 561,892 - GFF2501 0.46 -2.4 561,892 - GFF2501 0.46 -1.6 561,892 - GFF2501 0.46 +0.6 561,892 - GFF2501 0.46 +2.8 561,892 - GFF2501 0.46 +0.1 561,964 + GFF2501 0.49 -4.0 561,964 + GFF2501 0.49 -1.3 561,964 + GFF2501 0.49 -0.2 561,964 + GFF2501 0.49 +2.1 561,964 + GFF2501 0.49 +1.0 561,964 + GFF2501 0.49 +1.1 561,964 + GFF2501 0.49 -1.8 561,965 - GFF2501 0.49 +0.8 561,965 - GFF2501 0.49 -2.1 561,965 - GFF2501 0.49 -0.2 561,965 - GFF2501 0.49 -3.6 561,965 - GFF2501 0.49 -2.6 561,984 + GFF2501 0.50 -0.7 561,985 - GFF2501 0.50 -0.3 561,985 - GFF2501 0.50 -1.0 561,985 - GFF2501 0.50 +1.4 562,060 + GFF2501 0.54 -0.3 562,060 + GFF2501 0.54 -1.2 562,060 + GFF2501 0.54 -0.1 562,060 + GFF2501 0.54 +1.4 562,061 - GFF2501 0.54 -0.4 562,061 - GFF2501 0.54 +1.6 562,069 + GFF2501 0.55 -2.4 562,161 + GFF2501 0.59 -0.3 562,162 - GFF2501 0.59 -0.7 562,164 + GFF2501 0.59 +1.3 562,164 + GFF2501 0.59 -3.3 562,165 - GFF2501 0.59 -1.2 562,165 - GFF2501 0.59 -0.4 562,206 + GFF2501 0.62 +0.1 562,206 + GFF2501 0.62 -1.0 562,206 + GFF2501 0.62 -0.5 562,206 + GFF2501 0.62 +0.6 562,207 - GFF2501 0.62 -0.3 562,232 + GFF2501 0.63 +0.0 562,233 - GFF2501 0.63 +0.8 562,233 - GFF2501 0.63 -0.8 562,267 - GFF2501 0.65 +1.7 562,324 - GFF2501 0.68 -1.2 562,403 + GFF2501 0.72 +1.4 562,403 + GFF2501 0.72 -0.9 562,404 - GFF2501 0.72 +3.1 562,404 - GFF2501 0.72 -0.4 562,404 - GFF2501 0.72 +0.2 562,422 + GFF2501 0.73 -0.2 562,423 - GFF2501 0.73 -2.9 562,470 + GFF2501 0.75 -0.2 562,470 + GFF2501 0.75 -3.9 562,470 + GFF2501 0.75 +2.6 562,471 - GFF2501 0.75 -0.4 562,471 - GFF2501 0.75 +0.4 562,471 - GFF2501 0.75 -1.7 562,498 - GFF2501 0.76 -0.9 562,498 - GFF2501 0.76 -1.7 562,498 - GFF2501 0.76 -0.7 562,500 + GFF2501 0.76 -2.5 562,501 - GFF2501 0.77 -2.6 562,501 - GFF2501 0.77 +0.4 562,501 - GFF2501 0.77 -2.9 562,614 + GFF2501 0.82 -0.6 562,614 + GFF2501 0.82 -2.6 562,614 + GFF2501 0.82 -2.2 562,615 - GFF2501 0.82 +3.3 562,615 - GFF2501 0.82 -0.7 562,615 - GFF2501 0.82 +0.8 562,712 + GFF2501 0.87 -2.6 562,860 + -3.3 562,860 + -1.5 562,861 - +1.7 562,861 - -0.5 562,861 - -0.2 562,911 + +0.1 562,911 + +3.7 562,911 + -1.5 562,911 + -1.3 562,911 + -0.3 562,911 + -0.2 562,911 + +2.1 562,911 + -2.3 562,911 + -1.3 562,911 + -1.0 562,911 + +1.6 562,911 + -1.3 562,911 + +0.5 562,912 - -1.3 562,912 - -1.0 562,912 - -1.7 562,912 - +0.1 562,912 - -0.7 562,912 - +1.7 562,992 + -0.0 562,993 - +1.6 563,046 + -0.5 563,046 + -1.6 563,046 + -1.4 563,047 - +3.8 563,047 - +2.1 563,047 - -2.4 563,047 - +1.1 563,047 - +2.1 563,178 + GFF2502 0.10 -0.4 563,178 + GFF2502 0.10 -2.5 563,178 + GFF2502 0.10 -2.0 563,179 - GFF2502 0.10 +0.6 563,179 - GFF2502 0.10 -0.1 563,179 - GFF2502 0.10 +1.2 563,232 - GFF2502 0.13 -2.0 563,232 - GFF2502 0.13 +0.4 563,250 + GFF2502 0.14 +0.1 563,250 + GFF2502 0.14 -0.9 563,250 + GFF2502 0.14 -0.7 563,250 + GFF2502 0.14 +1.1 563,251 - GFF2502 0.14 -2.3 563,251 - GFF2502 0.14 +0.8 563,251 - GFF2502 0.14 -0.7 563,251 - GFF2502 0.14 -3.0 563,251 - GFF2502 0.14 +0.1 563,251 - GFF2502 0.14 +1.1 563,251 - GFF2502 0.14 -1.0 563,251 - GFF2502 0.14 +0.6 563,415 + GFF2502 0.22 +0.2 563,415 + GFF2502 0.22 +0.2 563,416 - GFF2502 0.22 -0.4 563,416 - GFF2502 0.22 -2.6 563,416 - GFF2502 0.22 -1.9 563,416 - GFF2502 0.22 -1.4 563,550 + GFF2502 0.29 -1.2 563,550 + GFF2502 0.29 +0.7 563,752 + GFF2502 0.39 +2.1 563,753 - GFF2502 0.39 +1.1 563,806 - GFF2502 0.42 +0.6 563,851 - GFF2502 0.44 -0.9 563,859 + GFF2502 0.45 +0.0 563,859 + GFF2502 0.45 -0.2 563,859 + GFF2502 0.45 +1.1 563,860 - GFF2502 0.45 +1.8 563,860 - GFF2502 0.45 +1.8 563,860 - GFF2502 0.45 -1.3 563,860 - GFF2502 0.45 -0.4
Or see this region's nucleotide sequence