Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2468 and GFF2469 are separated by 75 nucleotides GFF2469 and GFF2470 are separated by 2 nucleotides GFF2470 and GFF2471 are separated by 25 nucleotides GFF2471 and GFF2472 are separated by 34 nucleotides GFF2472 and GFF2473 overlap by 4 nucleotides
GFF2468 - Outer membrane protein assembly factor YaeT, at 527,524 to 529,926
GFF2468
GFF2469 - hypothetical protein, at 530,002 to 530,610
GFF2469
GFF2470 - no description, at 530,613 to 530,798
GFF2470
GFF2471 - Outer membrane porin protein 32 precursor, at 530,824 to 531,981
GFF2471
GFF2472 - no description, at 532,016 to 532,285
GFF2472
GFF2473 - hypothetical protein, at 532,282 to 532,893
GFF2473
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 530.060 kb on - strand at 530.114 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469 at 531.295 kb on + strand, within GFF2471 at 531.352 kb on + strand, within GFF2471 at 531.353 kb on - strand, within GFF2471 at 531.353 kb on - strand, within GFF2471 at 531.922 kb on + strand at 531.922 kb on + strand at 531.922 kb on + strand at 531.952 kb on + strand at 532.615 kb on + strand, within GFF2473 at 532.615 kb on + strand, within GFF2473 at 532.822 kb on + strand, within GFF2473 at 532.822 kb on + strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.823 kb on - strand, within GFF2473 at 532.891 kb on + strand at 532.891 kb on + strand at 532.892 kb on - strand at 532.892 kb on - strand at 532.916 kb on - strand at 532.953 kb on + strand at 532.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 530,060 - -1.8 530,114 + GFF2469 0.18 -0.9 530,159 + GFF2469 0.26 -1.6 530,159 + GFF2469 0.26 +0.6 530,159 + GFF2469 0.26 +1.5 530,159 + GFF2469 0.26 +1.8 530,160 - GFF2469 0.26 -0.3 530,160 - GFF2469 0.26 -0.6 530,160 - GFF2469 0.26 +0.8 530,241 - GFF2469 0.39 -2.2 530,241 - GFF2469 0.39 -0.2 530,430 - GFF2469 0.70 +0.1 530,430 - GFF2469 0.70 +0.0 531,295 + GFF2471 0.41 -1.8 531,352 + GFF2471 0.46 -3.3 531,353 - GFF2471 0.46 -0.4 531,353 - GFF2471 0.46 +0.0 531,922 + +0.6 531,922 + -0.4 531,922 + +0.7 531,952 + -1.4 532,615 + GFF2473 0.54 -1.2 532,615 + GFF2473 0.54 -0.5 532,822 + GFF2473 0.88 +1.2 532,822 + GFF2473 0.88 -2.9 532,823 - GFF2473 0.88 -1.0 532,823 - GFF2473 0.88 -1.8 532,891 + +1.6 532,891 + -0.2 532,892 - -0.2 532,892 - -2.0 532,916 - +0.9 532,953 + -2.6 532,954 - +1.1
Or see this region's nucleotide sequence