Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2453 and GFF2454 are separated by 266 nucleotides GFF2454 and GFF2455 overlap by 4 nucleotides
GFF2453 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT (EC 1.3.1.1), at 509,688 to 511,058
GFF2453
GFF2454 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 511,325 to 512,776
GFF2454
GFF2455 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 512,773 to 513,465
GFF2455
Position (kb) 511
512
513 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 510.346 kb on + strand, within GFF2453 at 510.346 kb on + strand, within GFF2453 at 510.469 kb on + strand, within GFF2453 at 510.470 kb on - strand, within GFF2453 at 510.895 kb on + strand, within GFF2453 at 510.895 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.904 kb on + strand, within GFF2453 at 510.904 kb on + strand, within GFF2453 at 510.905 kb on - strand, within GFF2453 at 510.905 kb on - strand, within GFF2453 at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.180 kb on - strand at 511.180 kb on - strand at 511.568 kb on + strand, within GFF2454 at 511.568 kb on + strand, within GFF2454 at 511.569 kb on - strand, within GFF2454 at 511.569 kb on - strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.620 kb on - strand, within GFF2454 at 511.620 kb on - strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 512.705 kb on + strand at 512.705 kb on + strand at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.941 kb on + strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 513.061 kb on + strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 510,346 + GFF2453 0.48 -2.6 510,346 + GFF2453 0.48 +1.1 510,469 + GFF2453 0.57 -1.0 510,470 - GFF2453 0.57 -0.2 510,895 + GFF2453 0.88 +0.5 510,895 + GFF2453 0.88 -1.4 510,901 + GFF2453 0.88 -1.7 510,901 + GFF2453 0.88 +0.6 510,901 + GFF2453 0.88 +1.6 510,901 + GFF2453 0.88 -2.3 510,902 - GFF2453 0.89 +0.8 510,902 - GFF2453 0.89 -0.3 510,902 - GFF2453 0.89 -3.2 510,902 - GFF2453 0.89 -2.1 510,904 + GFF2453 0.89 +0.5 510,904 + GFF2453 0.89 -2.8 510,905 - GFF2453 0.89 -2.4 510,905 - GFF2453 0.89 -1.6 511,179 + -2.9 511,179 + +1.0 511,179 + -4.6 511,179 + -0.5 511,179 + -0.6 511,179 + -1.6 511,179 + -0.2 511,180 - -1.7 511,180 - -3.5 511,568 + GFF2454 0.17 +1.0 511,568 + GFF2454 0.17 -0.2 511,569 - GFF2454 0.17 +0.8 511,569 - GFF2454 0.17 -0.2 511,619 + GFF2454 0.20 -0.2 511,619 + GFF2454 0.20 +0.9 511,619 + GFF2454 0.20 -1.2 511,619 + GFF2454 0.20 -0.0 511,620 - GFF2454 0.20 +1.1 511,620 - GFF2454 0.20 -0.4 511,622 + GFF2454 0.20 -1.0 511,622 + GFF2454 0.20 +0.6 511,622 + GFF2454 0.20 -2.7 511,622 + GFF2454 0.20 +0.2 511,622 + GFF2454 0.20 -0.5 511,622 + GFF2454 0.20 -1.6 511,622 + GFF2454 0.20 +0.6 511,622 + GFF2454 0.20 +0.7 511,623 - GFF2454 0.21 -0.4 511,623 - GFF2454 0.21 -0.3 511,623 - GFF2454 0.21 -0.7 511,623 - GFF2454 0.21 -1.8 511,623 - GFF2454 0.21 +0.8 511,623 - GFF2454 0.21 -0.9 512,705 + -0.2 512,705 + +0.8 512,938 + GFF2455 0.24 -2.6 512,938 + GFF2455 0.24 +1.6 512,938 + GFF2455 0.24 -2.8 512,939 - GFF2455 0.24 -1.0 512,939 - GFF2455 0.24 -2.1 512,939 - GFF2455 0.24 +1.1 512,939 - GFF2455 0.24 -1.0 512,941 + GFF2455 0.24 +3.0 512,942 - GFF2455 0.24 -0.0 512,942 - GFF2455 0.24 -0.8 512,942 - GFF2455 0.24 -2.1 512,942 - GFF2455 0.24 -0.7 512,942 - GFF2455 0.24 -0.9 513,061 + GFF2455 0.42 -0.5 513,062 - GFF2455 0.42 -2.1 513,062 - GFF2455 0.42 -0.2 513,062 - GFF2455 0.42 -1.6 513,062 - GFF2455 0.42 -3.4 513,089 - GFF2455 0.46 -0.9 513,089 - GFF2455 0.46 +0.1 513,578 - -0.6
Or see this region's nucleotide sequence