Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2427 and GFF2428 are separated by 14 nucleotides GFF2428 and GFF2429 are separated by 7 nucleotides GFF2429 and GFF2430 are separated by 22 nucleotides GFF2430 and GFF2431 are separated by 158 nucleotides
GFF2427 - Transcriptional regulator, MarR family, at 478,211 to 478,834
GFF2427
GFF2428 - Transcriptional regulator, LysR family, at 478,849 to 479,763
GFF2428
GFF2429 - putative membrane protein, at 479,771 to 480,595
GFF2429
GFF2430 - Protein secretion chaperonin CsaA, at 480,618 to 480,977
GFF2430
GFF2431 - RNA polymerase ECF-type sigma factor, at 481,136 to 481,663
GFF2431
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 478.873 kb on + strand at 478.874 kb on - strand at 478.874 kb on - strand at 479.818 kb on + strand at 479.819 kb on - strand at 479.907 kb on - strand, within GFF2429 at 480.182 kb on + strand, within GFF2429 at 480.182 kb on + strand, within GFF2429 at 480.183 kb on - strand, within GFF2429 at 480.243 kb on + strand, within GFF2429 at 480.302 kb on + strand, within GFF2429 at 480.575 kb on + strand at 480.576 kb on - strand at 480.642 kb on + strand at 480.642 kb on + strand at 480.642 kb on + strand at 480.643 kb on - strand at 480.790 kb on + strand, within GFF2430 at 480.856 kb on + strand, within GFF2430 at 480.856 kb on + strand, within GFF2430 at 480.856 kb on + strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 480.857 kb on - strand, within GFF2430 at 481.015 kb on + strand at 481.015 kb on + strand at 481.015 kb on + strand at 481.015 kb on + strand at 481.016 kb on - strand at 481.016 kb on - strand at 481.082 kb on - strand at 481.181 kb on + strand at 481.181 kb on + strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.182 kb on - strand at 481.343 kb on + strand, within GFF2431 at 481.344 kb on - strand, within GFF2431 at 481.344 kb on - strand, within GFF2431 at 481.383 kb on - strand, within GFF2431 at 481.409 kb on + strand, within GFF2431 at 481.410 kb on - strand, within GFF2431 at 481.568 kb on + strand, within GFF2431
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 478,873 + -0.4 478,874 - +0.3 478,874 - -1.3 479,818 + -1.2 479,819 - +2.8 479,907 - GFF2429 0.16 +0.2 480,182 + GFF2429 0.50 -1.4 480,182 + GFF2429 0.50 +0.3 480,183 - GFF2429 0.50 -0.7 480,243 + GFF2429 0.57 -1.9 480,302 + GFF2429 0.64 -1.1 480,575 + -1.8 480,576 - +0.7 480,642 + +0.2 480,642 + +1.9 480,642 + -0.1 480,643 - -3.1 480,790 + GFF2430 0.48 -2.0 480,856 + GFF2430 0.66 -0.2 480,856 + GFF2430 0.66 +0.2 480,856 + GFF2430 0.66 -0.9 480,857 - GFF2430 0.66 +0.4 480,857 - GFF2430 0.66 +0.5 480,857 - GFF2430 0.66 +2.2 480,857 - GFF2430 0.66 -1.3 480,857 - GFF2430 0.66 -0.7 481,015 + +0.3 481,015 + +0.6 481,015 + -0.4 481,015 + -2.5 481,016 - -0.5 481,016 - +0.8 481,082 - -0.4 481,181 + +1.7 481,181 + -1.7 481,182 - +0.4 481,182 - -0.8 481,182 - +0.3 481,182 - -1.7 481,182 - -1.9 481,182 - -1.7 481,343 + GFF2431 0.39 +2.2 481,344 - GFF2431 0.39 -1.5 481,344 - GFF2431 0.39 -0.5 481,383 - GFF2431 0.47 +0.6 481,409 + GFF2431 0.52 -0.6 481,410 - GFF2431 0.52 -0.1 481,568 + GFF2431 0.82 +0.2
Or see this region's nucleotide sequence