Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2420 and GFF2421 are separated by 13 nucleotides GFF2421 and GFF2422 overlap by 4 nucleotides GFF2422 and GFF2423 are separated by 36 nucleotides GFF2423 and GFF2424 overlap by 4 nucleotides
GFF2420 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 471,867 to 472,622
GFF2420
GFF2421 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 472,636 to 473,397
GFF2421
GFF2422 - Polysaccharide deacetylase, at 473,394 to 474,218
GFF2422
GFF2423 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 474,255 to 475,046
GFF2423
GFF2424 - ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron), at 475,043 to 475,894
GFF2424
Position (kb) 473
474
475 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 472.685 kb on + strand at 472.685 kb on + strand at 472.709 kb on + strand at 472.709 kb on + strand at 472.710 kb on - strand at 472.811 kb on + strand, within GFF2421 at 473.379 kb on + strand at 473.379 kb on + strand at 473.657 kb on - strand, within GFF2422 at 473.741 kb on - strand, within GFF2422 at 473.773 kb on + strand, within GFF2422 at 473.773 kb on + strand, within GFF2422 at 473.785 kb on + strand, within GFF2422 at 473.785 kb on + strand, within GFF2422 at 473.786 kb on - strand, within GFF2422 at 473.944 kb on + strand, within GFF2422 at 473.945 kb on - strand, within GFF2422 at 474.603 kb on + strand, within GFF2423 at 474.603 kb on + strand, within GFF2423 at 474.603 kb on + strand, within GFF2423 at 474.603 kb on + strand, within GFF2423 at 474.603 kb on + strand, within GFF2423 at 474.604 kb on - strand, within GFF2423 at 474.607 kb on + strand, within GFF2423 at 474.608 kb on - strand, within GFF2423 at 474.608 kb on - strand, within GFF2423 at 474.676 kb on + strand, within GFF2423 at 474.680 kb on - strand, within GFF2423 at 474.680 kb on - strand, within GFF2423 at 474.680 kb on - strand, within GFF2423 at 474.784 kb on + strand, within GFF2423 at 474.785 kb on - strand, within GFF2423 at 474.931 kb on + strand, within GFF2423 at 474.932 kb on - strand, within GFF2423 at 475.170 kb on + strand, within GFF2424 at 475.170 kb on + strand, within GFF2424 at 475.170 kb on + strand, within GFF2424 at 475.194 kb on + strand, within GFF2424 at 475.195 kb on - strand, within GFF2424 at 475.195 kb on - strand, within GFF2424
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 472,685 + +0.2 472,685 + -1.5 472,709 + -2.6 472,709 + +2.5 472,710 - -0.2 472,811 + GFF2421 0.23 -1.3 473,379 + -0.2 473,379 + -4.3 473,657 - GFF2422 0.32 -0.7 473,741 - GFF2422 0.42 -1.7 473,773 + GFF2422 0.46 +0.2 473,773 + GFF2422 0.46 -1.8 473,785 + GFF2422 0.47 +1.0 473,785 + GFF2422 0.47 -1.0 473,786 - GFF2422 0.48 +2.2 473,944 + GFF2422 0.67 +1.0 473,945 - GFF2422 0.67 +1.2 474,603 + GFF2423 0.44 -0.4 474,603 + GFF2423 0.44 -1.3 474,603 + GFF2423 0.44 +0.6 474,603 + GFF2423 0.44 -0.7 474,603 + GFF2423 0.44 -0.4 474,604 - GFF2423 0.44 +1.2 474,607 + GFF2423 0.44 +1.3 474,608 - GFF2423 0.45 +0.3 474,608 - GFF2423 0.45 +2.7 474,676 + GFF2423 0.53 +1.2 474,680 - GFF2423 0.54 +3.0 474,680 - GFF2423 0.54 -1.9 474,680 - GFF2423 0.54 +0.3 474,784 + GFF2423 0.67 -0.5 474,785 - GFF2423 0.67 -1.2 474,931 + GFF2423 0.85 +1.0 474,932 - GFF2423 0.85 +0.6 475,170 + GFF2424 0.15 -1.5 475,170 + GFF2424 0.15 -0.7 475,170 + GFF2424 0.15 -0.2 475,194 + GFF2424 0.18 +0.5 475,195 - GFF2424 0.18 -0.3 475,195 - GFF2424 0.18 -0.2
Or see this region's nucleotide sequence